Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060171 |
| length | 787 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_030954 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 19436483 ~ 19444949 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0035024 | negative regulation of Rho protein signal transduction | biological_process |
| GO:0003157 | endocardium development | biological_process |
| GO:0051260 | protein homooligomerization | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0043433 | negative regulation of DNA-binding transcription factor activity | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:1900125 | regulation of hyaluronan biosynthetic process | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0031463 | Cul3-RING ubiquitin ligase complex | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0003714 | transcription corepressor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2843 | Enables transcription corepressor activity. Acts upstream of or within circulatory system development; pectoral fin development; and regulation of macromolecule biosynthetic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including brain; fin; head; pericardial region; and pleuroperitoneal region. Orthologous to human KCTD10 (potassium channel tetramerization domain containing 10). |
| ensembl_id | ENSDART00000141268 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061973 | lncRNA | downstream | 107010 | 19334206 ~ 19335668 (-) | False | XLOC_030952 |
| TCONS_00061972 | lncRNA | downstream | 127030 | 19312775 ~ 19315648 (-) | True | XLOC_030951 |
| TCONS_00061971 | lncRNA | downstream | 658244 | 18783738 ~ 18784434 (-) | True | XLOC_030942 |
| TCONS_00061968 | lncRNA | downstream | 1018041 | 18317903 ~ 18424637 (-) | False | XLOC_030940 |
| TCONS_00061974 | lncRNA | upstream | 515731 | 19960680 ~ 19963521 (-) | False | XLOC_030959 |
| TCONS_00060177 | lncRNA | upstream | 515731 | 19960680 ~ 19963556 (-) | True | XLOC_030959 |
| TCONS_00061975 | lncRNA | upstream | 660059 | 20105008 ~ 20109265 (-) | True | XLOC_030961 |
| TCONS_00061976 | lncRNA | upstream | 844410 | 20289359 ~ 20297439 (-) | True | XLOC_030967 |
| TCONS_00061977 | lncRNA | upstream | 971773 | 20416722 ~ 20419859 (-) | False | XLOC_030969 |
| TCONS_00060166 | mRNA | downstream | 42512 | 19385503 ~ 19400166 (-) | False | XLOC_030953 |
| TCONS_00060167 | mRNA | downstream | 48238 | 19386199 ~ 19394440 (-) | False | XLOC_030953 |
| TCONS_00060161 | mRNA | downstream | 390494 | 19021786 ~ 19052184 (-) | False | XLOC_030950 |
| TCONS_00060162 | mRNA | downstream | 406514 | 19022702 ~ 19036164 (-) | False | XLOC_030950 |
| TCONS_00060158 | mRNA | downstream | 428089 | 19006701 ~ 19014589 (-) | False | XLOC_030948 |
| TCONS_00060173 | mRNA | upstream | 44632 | 19489581 ~ 19494048 (-) | True | XLOC_030955 |
| TCONS_00060174 | mRNA | upstream | 351028 | 19795977 ~ 19833310 (-) | True | XLOC_030956 |
| TCONS_00060175 | mRNA | upstream | 405879 | 19850828 ~ 19861766 (-) | True | XLOC_030957 |
| TCONS_00060176 | mRNA | upstream | 441106 | 19886055 ~ 19932621 (-) | True | XLOC_030958 |
| TCONS_00060178 | mRNA | upstream | 524845 | 19969794 ~ 19988772 (-) | True | XLOC_030960 |
| TCONS_00060168 | other | downstream | 46969 | 19391567 ~ 19395709 (-) | True | XLOC_030953 |
| TCONS_00060165 | other | downstream | 106151 | 19334206 ~ 19336527 (-) | True | XLOC_030952 |
| TCONS_00060164 | other | downstream | 390181 | 19051905 ~ 19052497 (-) | True | XLOC_030950 |
| TCONS_00060163 | other | downstream | 410022 | 19025777 ~ 19032656 (-) | False | XLOC_030950 |
| TCONS_00060160 | other | downstream | 428744 | 19010429 ~ 19013934 (-) | True | XLOC_030948 |
| TCONS_00060172 | other | upstream | 44632 | 19489581 ~ 19492515 (-) | False | XLOC_030955 |
| TCONS_00060180 | other | upstream | 671252 | 20116201 ~ 20121024 (-) | True | XLOC_030962 |
| TCONS_00060186 | other | upstream | 963887 | 20408836 ~ 20408952 (-) | True | XLOC_030968 |
| TCONS_00060189 | other | upstream | 999277 | 20444226 ~ 20445673 (-) | False | XLOC_030970 |
| TCONS_00060188 | other | upstream | 999277 | 20444226 ~ 20445673 (-) | True | XLOC_030970 |
