RNA id: TCONS_00060163


Basic Information

Item Value
RNA id TCONS_00060163
length 710
RNA type processed_transcript
GC content 0.43
exon number 5
gene id XLOC_030950
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19021786 ~ 19052497 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCATCATGCCGTTGTCAGTACTTGAGGGTTGAACTCAGGATTGAAGAGAGACCAAGAAGTAAAGAGAAAGTGAAGGATAGAGAAATGAGCATAGAAACAGACCAACAGAAAGACAACCACAAAGAGaaaatttttaaaatagaaaaatatagaaatgaattGTCTGAAATAGTTCAGATTTTTATATAGTTTAGAAGTTCAGATTAGGTAAAAATGCTAAAGTCTGATGCAGAGTCGATAGATAAGTTTAGCTGATATTTAATGGCTGTCATCAGAATGATACTATGGACAACCGTGATATTGAAGCCACATCTTCATCTACTTCTACAGACTGTTCACGATCAGGGAGAAGGTTCAAAGTTGGGACTCGACTCAAAGCACGACAGTTGCGCAGTGGACGCCGAACAGATACCAGTCGCTCCTGCAGTTCAGTCTCCTCTTTATCCTCCATTAGCAGACCTCTTCTTGGCAACTTTGAGGAGTCCATTCTGAAGGGTCGTTTTACTCCATCTGGACGGATTGAGGGCTTTACAGCAGAGATCGGGGCAAGCGGCTCCTATTGCCCACAGCATGCCACCTTACCTGTGCAAGTGACTTATTATGACACCTCAGAGCACAGTGCCCCTTCTCCCTTTCTGGGAGTGATCTTGTTAGAACCACTTGGAAAAAAAGGATACAGCGTACCCAAAGCAGGGACCATTCAAGTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061971 lncRNA downstream 241343 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00061968 lncRNA downstream 601140 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA downstream 601140 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA downstream 601140 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061967 lncRNA downstream 736201 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061972 lncRNA upstream 280119 19312775 ~ 19315648 (-) True XLOC_030951
TCONS_00061973 lncRNA upstream 301550 19334206 ~ 19335668 (-) False XLOC_030952
TCONS_00060171 lncRNA upstream 410022 19442678 ~ 19444949 (-) True XLOC_030954
TCONS_00061974 lncRNA upstream 928024 19960680 ~ 19963521 (-) False XLOC_030959
TCONS_00060177 lncRNA upstream 928024 19960680 ~ 19963556 (-) True XLOC_030959
TCONS_00060158 mRNA downstream 11188 19006701 ~ 19014589 (-) False XLOC_030948
TCONS_00060157 mRNA downstream 19487 18965494 ~ 19006290 (-) True XLOC_030947
TCONS_00060154 mRNA downstream 62983 18943043 ~ 18962794 (-) False XLOC_030946
TCONS_00060155 mRNA downstream 64060 18943474 ~ 18961717 (-) False XLOC_030946
TCONS_00060156 mRNA downstream 64083 18953209 ~ 18961694 (-) True XLOC_030946
TCONS_00060166 mRNA upstream 352847 19385503 ~ 19400166 (-) False XLOC_030953
TCONS_00060167 mRNA upstream 353543 19386199 ~ 19394440 (-) False XLOC_030953
TCONS_00060169 mRNA upstream 403827 19436483 ~ 19444930 (-) False XLOC_030954
TCONS_00060170 mRNA upstream 403829 19436485 ~ 19444930 (-) False XLOC_030954
TCONS_00060173 mRNA upstream 456925 19489581 ~ 19494048 (-) True XLOC_030955
TCONS_00060160 other downstream 11843 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060159 other downstream 17003 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060141 other downstream 1423571 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 1984489 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 2126730 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060164 other upstream 19249 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 301550 19334206 ~ 19336527 (-) True XLOC_030952
TCONS_00060168 other upstream 358911 19391567 ~ 19395709 (-) True XLOC_030953
TCONS_00060172 other upstream 456925 19489581 ~ 19492515 (-) False XLOC_030955
TCONS_00060180 other upstream 1083545 20116201 ~ 20121024 (-) True XLOC_030962

Expression Profile

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