RNA id: TCONS_00061967


Basic Information

Item Value
RNA id TCONS_00061967
length 566
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_030939
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18288810 ~ 18289576 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGACTCCAGATGTGCCAAATCTCCCTCTGAATTATCAGTAATTCCACTCTTTCCTCTGCTAATCACAAGGAGATTGGACACATCAGAATGACTTGAGGGAGAGAAATCATCTACTGCCATGTTTGCTTCGCATCAAACTGTGAGATTGGCACAAACAGAGTTCATCGTGGGCTGTTCTGAGTACCGGGAGCCATTGTGTAGTTCTGCGATGGATTTCATGACAACGACTCCCCTTTGTGATTGTTTATGCCAGTGCAATTGAGGTCAGCACAAACACTCTAATCAAATGGTTGTGATGCAATGGAAGATTAGCCATGATTGTTTTTCTGTTCATAATTGTGCATTTTAGATGGCGTGATTTTTAATACAGCAATGTAAAATCAGCAGCGGCTCTGTTGCTAAACTGTGCTTTCAGCTTGTGGTTTGTAGGGAATTAACACTTTTGAATAAATCATATACCCTGAGAGCAAAGTGGAGTATACAAGTGTGCTTAAGGACATCTTGTTTACTAGCTGTTAAGTATCTTAAAATTCTCAGACACACTTTAAAGATTCAATGGCATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060135 lncRNA downstream 1555267 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 1931870 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 1973069 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 2070033 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 2339942 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061968 lncRNA upstream 28327 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 117805 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA upstream 132549 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061971 lncRNA upstream 494162 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00061972 lncRNA upstream 1023199 19312775 ~ 19315648 (-) True XLOC_030951
TCONS_00060146 mRNA downstream 242757 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060145 mRNA downstream 245350 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060144 mRNA downstream 281733 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060143 mRNA downstream 412101 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060142 mRNA downstream 687051 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060147 mRNA upstream 141825 18431401 ~ 18446483 (-) False XLOC_030941
TCONS_00060148 mRNA upstream 141825 18431401 ~ 18474486 (-) False XLOC_030941
TCONS_00060149 mRNA upstream 156589 18446165 ~ 18513950 (-) True XLOC_030941
TCONS_00060150 mRNA upstream 537738 18827314 ~ 18897482 (-) False XLOC_030943
TCONS_00060151 mRNA upstream 537747 18827323 ~ 18897482 (-) True XLOC_030943
TCONS_00060141 other downstream 686604 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 1247522 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 1389763 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 1398564 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 1843345 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060159 other upstream 719070 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 720853 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 736201 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 762329 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 1044630 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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