RNA id: TCONS_00060143


Basic Information

Item Value
RNA id TCONS_00060143
length 949
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_030936
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 17848665 ~ 17876709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTCGCGGACTGAGCAGGACTGGGGTGTACATGACAGTATGCCTTCTCTGGGTGACTGGATGCTTTACGCAAAAAGTCTACTTTGATTGTGGAGCCAAGGTGGATGTTGTAGATGTTCAGGGCCTCATTCTGTCCCCTGGATTCCCTTACAACTATTCATCTGGAACTCACTGCGTATGGCAGTTCTTTGTGCCTGTCGGTCACCAGCTAGTCATGGAGATGTTTGATTTTGACGTCTTCGAAAGTCACAGTAGCCCTTCGAGATTCACCACCGCTTCAGTCCTGGAAGAGTTACCAAACGGCGATGGCACGTTGGTATCAAAAAGCCTCGCGAGTCCAAAGGAGCCCCAATCCACACACAGAGAAGAGGTCAAACAAGTGGTGATCCAAGAGCAGTCCACCAAAATGGAAATGACCAAAGTTTCCAATTCTGCCAAAATACTCTCTGATTCCCCCTCGGCTGCTCAAGCATCTCTTCCGCAATCCAGAGGACAGCCAGCCGAAGACAGAAATTCGGTTTCATCTCAGTCATCAAGAGCAGCCAGAGACTTTATCTCCACAAGTCCACAAACAGACGCAGATGAAGCTGTAAGCCCTGAAACCCAGTCGCCTCTGGTGGATGCCTGTCCGCACGATGTCCTCTACATATCTGATCTCATTACCTTCTCCTCCCGATTCTGCGGATCCAGGCGTCCGTCGAGCAGCCAGCTGGTCTTCGGCTCTGAAGATGACATGGTGGAGGTTATCATGGAGCTGATCACTACTACCCACTGGGGCCGTGGATTCGCTCTCCTCTTCCACTATCAGAATCAAACAAAAGCAGCCATGACTGAACAGCAGAGATCTGTGTTGACCTCAGACAGCAGAACTAGTGCGCTGCTCGGTGCAGTAAGTGGAACAGTCGCATTCGCTGTGGCTCTCGCTGGCATCCTCTGTGCGATTTTTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-193 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000141978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060135 lncRNA downstream 1115122 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 1491725 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 1532924 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 1629888 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 1899797 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061967 lncRNA upstream 412101 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061968 lncRNA upstream 441194 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 530672 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA upstream 545416 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061971 lncRNA upstream 907029 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00060142 mRNA downstream 246906 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060138 mRNA downstream 852183 16862617 ~ 16996482 (-) True XLOC_030932
TCONS_00060136 mRNA downstream 865329 16797209 ~ 16983336 (-) False XLOC_030932
TCONS_00060134 mRNA downstream 1057442 16719127 ~ 16791223 (-) False XLOC_030931
TCONS_00060131 mRNA downstream 1114555 16677264 ~ 16734110 (-) False XLOC_030931
TCONS_00060144 mRNA upstream 4365 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060145 mRNA upstream 163345 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060146 mRNA upstream 163364 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060147 mRNA upstream 554692 18431401 ~ 18446483 (-) False XLOC_030941
TCONS_00060148 mRNA upstream 554692 18431401 ~ 18474486 (-) False XLOC_030941
TCONS_00060141 other downstream 246459 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 807377 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 949618 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 958419 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 1403200 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060159 other upstream 1131937 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 1133720 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 1149068 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 1175196 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 1457497 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_02063411_02065517.mRNA True 1056 mRNA 0.48 2 CI01000071 2063411 ~ 2065565 (+)