RNA id: TCONS_00060138


Basic Information

Item Value
RNA id TCONS_00060138
length 992
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_030932
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16797209 ~ 16996482 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCACCataaagctaataataataagaagaacatTTTCCGTCTAGCTTTGTTTGCATAACCCCAATTTAAgctcaccaaaattggacaatagaagtttggaaaaacgttgtctggtctgataagtctcgatttctgctgcagcattctgcagGTCTAGCCAAGCCCATGGGTCTGGTGGAGGGTCCTGGAGGTCTAGGACAGGGCGGTGCTGCTGCCACGCTGGGAGAGGACAGCCGGGAGACTGAAGGGAGATTCGAGGAGTATGGCTACAACGCTCAGCTGAGTGACCGCATCTCCTTGGACAGGAATATTCCGGACTACAGGCCCAAAAAGTGTAAGCAGCTGACCTACTCCGATGACCTTCCCCAGATCTCTGTGGTCTTCATCTTTGTGAACGAAGCTCTTTCTGTCATCCTTCGCTCAGTTCACAGCATGGTCAACCACACTCCGGCACATCTGCTCAAAGAAATCATCCTGGTGGATGACAACAGCGACAGCGTGGAGCTAAAGTTCAATCTGGATCATTATGTGAATAAACGATATCCTGGCCTGGTGAAGATCGTGAGGAACAGTAAGAGAGAAGGCCTCATTCGTGCCAGGATTCACGGCTGGAACGCAGCCACTGCTCCTGTTGTAGGCTTCTTTGACGCTCACGTGGAGTTCAACACAGCCTGGGCTGAGCCGATCCTCACCAGAGTGAAAGAAGATCACACTAGGATAATCCTCCCTGCGATAGATAATATCAAGTACAATACCTTTGAGGTGCAGCAATACGCTAATGCGGCTCATGGCTACAACTGGGGCCTGTGGTGCATGTACATCATCCCGCCTCAGGATTGGCTGGACAGAGGAGATGAAACTGCTCCAATCAGGACTCCAGCAATGATCGGCTGCTCTTTTGTAGTGGATCGTGAATATTTTGGAGAGATCGGTCTGCTTGATCCGGGCATGGAGGTCTATGGAGGAGAGAACATTGAACTTGGGATGAGG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-21 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in hindbrain; midbrain; and telencephalon. Orthologous to human GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9).

Ensembl:

ensembl_id ENSDART00000144501

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060135 lncRNA downstream 129074 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 505677 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 546876 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 643840 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 913749 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061967 lncRNA upstream 1292328 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061968 lncRNA upstream 1321421 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 1410899 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA upstream 1425643 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061971 lncRNA upstream 1787256 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00060134 mRNA downstream 71394 16719127 ~ 16791223 (-) False XLOC_030931
TCONS_00060132 mRNA downstream 128507 16677264 ~ 16734110 (-) False XLOC_030931
TCONS_00060131 mRNA downstream 128507 16677264 ~ 16734110 (-) False XLOC_030931
TCONS_00060133 mRNA downstream 128557 16718919 ~ 16734060 (-) False XLOC_030931
TCONS_00060130 mRNA downstream 387243 16465109 ~ 16475374 (-) True XLOC_030929
TCONS_00060142 mRNA upstream 603624 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060143 mRNA upstream 852183 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060144 mRNA upstream 884592 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060145 mRNA upstream 1043572 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060146 mRNA upstream 1043591 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060129 other downstream 417152 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060114 other downstream 913784 15944411 ~ 15948833 (-) False XLOC_030923
TCONS_00060112 other downstream 1128037 15734525 ~ 15734580 (-) True XLOC_030920
TCONS_00060102 other downstream 1639160 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060087 other downstream 2489681 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060140 other upstream 44139 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060141 other upstream 603388 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060159 other upstream 2012164 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 2013947 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 2029295 19025777 ~ 19032656 (-) False XLOC_030950

Expression Profile

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