RNA id: TCONS_00060141


Basic Information

Item Value
RNA id TCONS_00060141
length 854
RNA type processed_transcript
GC content 0.36
exon number 3
gene id XLOC_030935
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 17599870 ~ 17602206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttattagagcagctgtcgatgtgggcaggtgttcataaaacgtgatttttatagttttgcgtgactcctttttcattgcccgggatttagcaggcagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcggctgcccacgggaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtatgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatcttcccattcttatttaattgttattgacaggaaagtctgtttatctgtttttactagtgtatattgtgcttacaatatagaaacgaagatttattttctgaggttacagccagaagtcaattaaattagttttaaatgacatatgcatggttaattttatttagatcattaagttcataatacttaattaaaatgagtacagtcaacatatagcaatgtataagtaagttaagttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060135 lncRNA downstream 866327 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 1242930 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 1284129 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 1381093 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 1651002 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061967 lncRNA upstream 686604 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061968 lncRNA upstream 715697 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 805175 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA upstream 819919 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061971 lncRNA upstream 1181532 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00060138 mRNA downstream 603388 16862617 ~ 16996482 (-) True XLOC_030932
TCONS_00060136 mRNA downstream 616534 16797209 ~ 16983336 (-) False XLOC_030932
TCONS_00060134 mRNA downstream 808647 16719127 ~ 16791223 (-) False XLOC_030931
TCONS_00060131 mRNA downstream 865760 16677264 ~ 16734110 (-) False XLOC_030931
TCONS_00060143 mRNA upstream 246459 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060144 mRNA upstream 278868 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060145 mRNA upstream 437848 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060146 mRNA upstream 437867 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060147 mRNA upstream 829195 18431401 ~ 18446483 (-) False XLOC_030941
TCONS_00060140 other downstream 558582 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 700823 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 709624 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 1154405 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060114 other downstream 1651037 15944411 ~ 15948833 (-) False XLOC_030923
TCONS_00060159 other upstream 1406440 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 1408223 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 1423571 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 1449699 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 1732000 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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