RNA id: TCONS_00060145


Basic Information

Item Value
RNA id TCONS_00060145
length 1229
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_030938
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18040054 ~ 18046053 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGGATGAAGCTCTTAAAAGCAACAGTGAAATCAATGATGGAAAGGATCCAGACCCTTGGATAGGAGTGGTACCGGTTCAGATGGAAGAAGGAACAGTTTCCAGCAACAGCAACCAGGAGTCCTTTGCTGCATCTATGGTTAATAAgATGAAGCGGGCTCTTGTTTTGGGTGCGTCTGCTTTGATCATACTGGCTTTAAACCAGAACACTGTCCGAGAGGTGAGGACTTTGCTGTTCTGTTCATTaaagctttaaagggatagttcacacaaaaccaAAATGTCTGTCATTATTtaatcaccctttacttgttctaaaTCTgttgttgaactcaaaagaagatattttgaagaaagctgaaaacttgtaaccactgacttacatagtatttatttttccttctatggaagtcaatggttagaggtcATCATCTTTCTTCataatatcatcttttgtgtttagcagaagaaagaatctcataaagctttggaaccacttgagtttGACTTAATAGAgagcaaatttgtatttttgcgtgaactatccctttaatgattttcctttttttaaaaagaaaactgttCTTTCCGCTGCAGATGGATCTCTCTCAGGTCCTCTCAAAACCAATCATTGTCATTCAGACATCAGAAAATGTCACTAAGCTCATCGGAGCTCTTCTCAGGGGCCTTCGTGCAACAGCAAAAATCACTTACAAGTCTTTTCTACAAGACAGCCTGGGGGCCACCTTGACCCTGTGGTCCAGCTGCGGTCGTTCAAGAGGAGGCTTATATGGGGAATGGCAAGGGGTCATCTGCACTGGGGAGACTAACTCTCAGGTCCAGAAATATCTCCAGCAGCTGTGGAACACCGTTGTTCTGGTGGCCCTTGTTCTCTCCACAGGGGTCATAGTTCAAGCACGCTGGCAGTACCAGGACAACCAATTTAATGACGATTTAGAGTCAAACCTGAAGCAAGACATTCTGAAGAGATTATCAGCACTGAAGACGAGGACATACCGGCAGCCCAAAGTGAGATGTGATCCAACACAAACTCAAACGATGGAGACGGAGAGTTGTGCAGTTTGTCTGGAACAATACAACAACAACCAGTGTTTGCGGGTGTTACCGTGCCTCCATGAGTTTCACAGAGATTGTGTGGATCCTTGGCTGCTCCTCCAGCAGACCTGCCCTCTCTGCAAGCGCAGCGTTCTTGGTAATTTCTATTGA

Function

GO:

id name namespace
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-65 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Golgi to vacuole transport; protein targeting to vacuole; and ubiquitin-dependent protein catabolic process. Predicted to be part of Golgi transport complex. Predicted to be active in endosome; membrane; and trans-Golgi network. Is expressed in female organism. Orthologous to human RNF215 (ring finger protein 215).

Ensembl:

ensembl_id ENSDART00000082583

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060135 lncRNA downstream 1306511 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 1683114 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 1724313 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 1821277 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 2091186 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061967 lncRNA upstream 245350 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061968 lncRNA upstream 274443 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 363921 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA upstream 378665 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061971 lncRNA upstream 740278 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00060144 mRNA downstream 32977 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060143 mRNA downstream 163345 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060142 mRNA downstream 438295 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060138 mRNA downstream 1043572 16862617 ~ 16996482 (-) True XLOC_030932
TCONS_00060136 mRNA downstream 1056718 16797209 ~ 16983336 (-) False XLOC_030932
TCONS_00060147 mRNA upstream 387941 18431401 ~ 18446483 (-) False XLOC_030941
TCONS_00060148 mRNA upstream 387941 18431401 ~ 18474486 (-) False XLOC_030941
TCONS_00060149 mRNA upstream 402705 18446165 ~ 18513950 (-) True XLOC_030941
TCONS_00060150 mRNA upstream 783854 18827314 ~ 18897482 (-) False XLOC_030943
TCONS_00060151 mRNA upstream 783863 18827323 ~ 18897482 (-) True XLOC_030943
TCONS_00060141 other downstream 437848 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 998766 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 1141007 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 1149808 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 1594589 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060159 other upstream 965186 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 966969 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 982317 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 1008445 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 1290746 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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