RNA id: TCONS_00060149


Basic Information

Item Value
RNA id TCONS_00060149
length 534
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_030941
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18431401 ~ 18513950 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGATGGTTCCTACTACGAGATCATGTGGGTGGACTTTGAGATTGACAATTTCATCACATTGCGGTCATCGCAGTCCGTCCGCTGGCAGATCGAGTATCCATCCACTGGAGCGTCAGCTGAGGTCATCTCCACCATCTACATCAGCCAGAGAGACATCCAGGGCATCGTGCCCATCGCTGAGGACACAGAGATTCTGAACACTGCCATTCTGACCGGACGGCGTGTTTCCATGCCGGTGAAGGTTGTGACAGTGGAGCAGGATGGGACAGTCAGAGAGGTTGACGACCCCATCACCTGCATCTCCACCGATGAGGACGTCCTGAAGGTCTCGCTCGGCTGTGATGAGGTACTGGTGAATGGCAATGAGAAGAGGGGGCGTGTCTCTCTTCAAGTGAACTTTACCTACCTCTATTTGACCAGCCAATTAGAGCTCACCGTCTGGGTGCCACGATTACCGCTCCAAATTGACGTCTCTGATGTGGAGCTCAACCAAGTCAAAGGATGGCGGGTGCCCATCATCACTAACAAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061968 lncRNA downstream 21528 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA downstream 21528 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00061970 lncRNA downstream 21528 18422125 ~ 18424637 (-) True XLOC_030940
TCONS_00061967 lncRNA downstream 156589 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00060135 lncRNA downstream 1712622 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061971 lncRNA upstream 269788 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00061972 lncRNA upstream 798825 19312775 ~ 19315648 (-) True XLOC_030951
TCONS_00061973 lncRNA upstream 820256 19334206 ~ 19335668 (-) False XLOC_030952
TCONS_00060171 lncRNA upstream 928728 19442678 ~ 19444949 (-) True XLOC_030954
TCONS_00061974 lncRNA upstream 1446730 19960680 ~ 19963521 (-) False XLOC_030959
TCONS_00060146 mRNA downstream 400112 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060145 mRNA downstream 402705 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060144 mRNA downstream 439088 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060143 mRNA downstream 569456 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060142 mRNA downstream 844406 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060150 mRNA upstream 313364 18827314 ~ 18897482 (-) False XLOC_030943
TCONS_00060151 mRNA upstream 313373 18827323 ~ 18897482 (-) True XLOC_030943
TCONS_00060152 mRNA upstream 391018 18904968 ~ 18911114 (-) True XLOC_030944
TCONS_00060153 mRNA upstream 399000 18912950 ~ 18924834 (-) True XLOC_030945
TCONS_00060154 mRNA upstream 429093 18943043 ~ 18962794 (-) False XLOC_030946
TCONS_00060141 other downstream 843959 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 1404877 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 1547118 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 1555919 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 2000700 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060159 other upstream 494696 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 496479 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 511827 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 537955 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 820256 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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