Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060168 |
| length | 614 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_030953 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 19385503 ~ 19400166 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0003170 | heart valve development | biological_process |
| GO:0035881 | amacrine cell differentiation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0008016 | regulation of heart contraction | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0060579 | ventral spinal cord interneuron fate commitment | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-277 | Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in atrioventricular canal development and heart looping. Acts upstream of or within heart valve development; positive regulation of transcription, DNA-templated; and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in several structures, including forebrain neural keel; nervous system; optic vesicle; pericardial region; and presumptive neural retina. Orthologous to human FOXN4 (forkhead box N4). |
| ensembl_id | ENSDART00000127346 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061973 | lncRNA | downstream | 55899 | 19334206 ~ 19335668 (-) | False | XLOC_030952 |
| TCONS_00061972 | lncRNA | downstream | 75919 | 19312775 ~ 19315648 (-) | True | XLOC_030951 |
| TCONS_00061971 | lncRNA | downstream | 607133 | 18783738 ~ 18784434 (-) | True | XLOC_030942 |
| TCONS_00061968 | lncRNA | downstream | 966930 | 18317903 ~ 18424637 (-) | False | XLOC_030940 |
| TCONS_00060171 | lncRNA | upstream | 46969 | 19442678 ~ 19444949 (-) | True | XLOC_030954 |
| TCONS_00061974 | lncRNA | upstream | 564971 | 19960680 ~ 19963521 (-) | False | XLOC_030959 |
| TCONS_00060177 | lncRNA | upstream | 564971 | 19960680 ~ 19963556 (-) | True | XLOC_030959 |
| TCONS_00061975 | lncRNA | upstream | 709299 | 20105008 ~ 20109265 (-) | True | XLOC_030961 |
| TCONS_00061976 | lncRNA | upstream | 893650 | 20289359 ~ 20297439 (-) | True | XLOC_030967 |
| TCONS_00060161 | mRNA | downstream | 339383 | 19021786 ~ 19052184 (-) | False | XLOC_030950 |
| TCONS_00060162 | mRNA | downstream | 355403 | 19022702 ~ 19036164 (-) | False | XLOC_030950 |
| TCONS_00060158 | mRNA | downstream | 376978 | 19006701 ~ 19014589 (-) | False | XLOC_030948 |
| TCONS_00060157 | mRNA | downstream | 385277 | 18965494 ~ 19006290 (-) | True | XLOC_030947 |
| TCONS_00060155 | mRNA | downstream | 429850 | 18943474 ~ 18961717 (-) | False | XLOC_030946 |
| TCONS_00060169 | mRNA | upstream | 40774 | 19436483 ~ 19444930 (-) | False | XLOC_030954 |
| TCONS_00060170 | mRNA | upstream | 40776 | 19436485 ~ 19444930 (-) | False | XLOC_030954 |
| TCONS_00060173 | mRNA | upstream | 93872 | 19489581 ~ 19494048 (-) | True | XLOC_030955 |
| TCONS_00060174 | mRNA | upstream | 400268 | 19795977 ~ 19833310 (-) | True | XLOC_030956 |
| TCONS_00060175 | mRNA | upstream | 455119 | 19850828 ~ 19861766 (-) | True | XLOC_030957 |
| TCONS_00060165 | other | downstream | 55040 | 19334206 ~ 19336527 (-) | True | XLOC_030952 |
| TCONS_00060164 | other | downstream | 339070 | 19051905 ~ 19052497 (-) | True | XLOC_030950 |
| TCONS_00060163 | other | downstream | 358911 | 19025777 ~ 19032656 (-) | False | XLOC_030950 |
| TCONS_00060160 | other | downstream | 377633 | 19010429 ~ 19013934 (-) | True | XLOC_030948 |
| TCONS_00060159 | other | downstream | 382793 | 19008646 ~ 19008774 (-) | True | XLOC_030949 |
| TCONS_00060172 | other | upstream | 93872 | 19489581 ~ 19492515 (-) | False | XLOC_030955 |
| TCONS_00060180 | other | upstream | 720492 | 20116201 ~ 20121024 (-) | True | XLOC_030962 |
| TCONS_00060186 | other | upstream | 1013127 | 20408836 ~ 20408952 (-) | True | XLOC_030968 |
| TCONS_00060189 | other | upstream | 1048517 | 20444226 ~ 20445673 (-) | False | XLOC_030970 |
| TCONS_00060188 | other | upstream | 1048517 | 20444226 ~ 20445673 (-) | True | XLOC_030970 |
