RNA id: TCONS_00060201


Basic Information

Item Value
RNA id TCONS_00060201
length 583
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_030980
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21059459 ~ 21065094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGGTGTGATGCGGACAATCAGCTGATCATCACTGCTGCTGCCAGTATGATAGATATGTAACGTTAACTTTAGATTGAATTGGTCATAAAATGGAGGTTCCTGCAGTAAACCAGAGCCATTCGCAGCCACCACAGGAGACATGGGCCGAACAGAGCCACTACAGGAACCCAGCCATGCCTTCTTTAAGCTGTCCAGCTCCTCCACATCACTATCCAAACCTGACCCCGGATCAGCAGAGAGCAGCATTCAGTGTGACCACAGTGAACCACATGACTGTACCACGTCCACCGTCACTGTACTGGGACCCGTCACAGCAATCACACCCAGatgcaTTTAGAGCTGTTCCTGAGATCACAAACATGTCAGCTCAAGGGATGCCACAGAAAAGCTACTCATTACCAACGAGCCCAGTGTCTAAATTAGAGTCCCGGTATGGCCTGGATCCTCAGCTTCTTCCTAGTGGTGCAGGTGATTAAAGAGGACAAGATGCAGTGGGAAGGGAAAGTGTTTGCTTCAGAGTCCAAATCTTCAGTTCCTCCTCTTTCCTCAACCTTGTGCACCCTGGAGGACAGAGGTACTGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0090110 COPII-coated vesicle cargo loading biological_process
GO:0015031 protein transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0000149 SNARE binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-209 Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site.

Ensembl:

ensembl_id ENSDART00000143785

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061980 lncRNA downstream 440120 20616071 ~ 20619339 (-) True XLOC_030973
TCONS_00061979 lncRNA downstream 444839 20600387 ~ 20614620 (-) True XLOC_030972
TCONS_00061978 lncRNA downstream 639088 20416722 ~ 20420371 (-) True XLOC_030969
TCONS_00061977 lncRNA downstream 639600 20416722 ~ 20419859 (-) False XLOC_030969
TCONS_00061976 lncRNA downstream 762020 20289359 ~ 20297439 (-) True XLOC_030967
TCONS_00061981 lncRNA upstream 174239 21239333 ~ 21242084 (-) True XLOC_030981
TCONS_00061982 lncRNA upstream 544264 21609358 ~ 21852227 (-) False XLOC_030984
TCONS_00061983 lncRNA upstream 691563 21756657 ~ 21852215 (-) False XLOC_030984
TCONS_00061984 lncRNA upstream 732846 21797940 ~ 21852215 (-) False XLOC_030984
TCONS_00061985 lncRNA upstream 746991 21812085 ~ 21852215 (-) False XLOC_030984
TCONS_00060200 mRNA downstream 14766 21033771 ~ 21044693 (-) True XLOC_030979
TCONS_00060198 mRNA downstream 28463 20931252 ~ 21030996 (-) False XLOC_030978
TCONS_00060199 mRNA downstream 28525 20933926 ~ 21030934 (-) True XLOC_030978
TCONS_00060197 mRNA downstream 137782 20886770 ~ 20921677 (-) True XLOC_030977
TCONS_00060196 mRNA downstream 165466 20886282 ~ 20893993 (-) False XLOC_030977
TCONS_00060203 mRNA upstream 230653 21295747 ~ 21422390 (-) False XLOC_030983
TCONS_00060205 mRNA upstream 231473 21296567 ~ 21524251 (-) False XLOC_030983
TCONS_00060204 mRNA upstream 231473 21296567 ~ 21524251 (-) True XLOC_030983
TCONS_00060207 mRNA upstream 787620 21852714 ~ 21888368 (-) False XLOC_030986
TCONS_00060210 mRNA upstream 874639 21939733 ~ 22001053 (-) False XLOC_030988
TCONS_00060189 other downstream 613786 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060188 other downstream 613786 20444226 ~ 20445673 (-) True XLOC_030970
TCONS_00060186 other downstream 650507 20408836 ~ 20408952 (-) True XLOC_030968
TCONS_00060180 other downstream 938435 20116201 ~ 20121024 (-) True XLOC_030962
TCONS_00060172 other downstream 1566944 19489581 ~ 19492515 (-) False XLOC_030955
TCONS_00060202 other upstream 228036 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060206 other upstream 671265 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060212 other upstream 878288 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060221 other upstream 1022562 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060223 other upstream 1169313 22234407 ~ 22234505 (-) True XLOC_030995

Expression Profile

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