RNA id: TCONS_00060207


Basic Information

Item Value
RNA id TCONS_00060207
length 3843
RNA type mRNA
GC content 0.45
exon number 25
gene id XLOC_030986
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21852714 ~ 21888368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCTCTGaaaggggcgtgtgcgcgcgccGTGACTATGGTCCTGTCATGACGCATATGCCAAAATTATTCTTTATAACTTACTATCTGTTCACCAATAACTCATGAAAACCTTCCTACATTGACAAACATGTCGGACGAAGAGCTACCGTCTACTTCTCGGGAGGCGCACGCGGAGGCGGAAGAggAGGATCCGCCATTTCTCCTGGGTCCTCCTCCTAAAGCAGTGGTGAAGGAGAGCCTGGCTGACCCTGAGTATGAGGAAAAAAGAAAAACTGACCGTGCGAACAGATTTGAGTTCCTGCTGAAGCAGACTGAACTGTTCGCTCATTTCATTCAGCCTGCCAGTCAGAAGTCCCCCACGTCACCTCTGAAGGTGAAAATGGGGAGACCCCGAATCAAACAGGATGAGAAGCAGAACCTCCTTTCAGTTGGAGATAACCGGCATCGTCGAACAGAGCAGGAGGAGGACGAGGAGCTCCTATCTGAGAGCAGGAAGGCAGATAATGTTCTTGTTCGTTTTGAGGAGTCACCCTCATACATTAAGAATGGAACACTGAGAGATTACCAGATCAGAGGTCTGAATTGGATGATTTCTCTGTATGAGAATGGCATCAACGGCATCCTGGCTGATGAGATgGGTCTGGGTAAGACCCTGCAGACAATCGCGTTGCTAGGCTACCTGAAGCACTACAGGAACATTCCAGGCCCTCACATGGTCCTAGTGCCCAAATCTACTCTGCATAACTGGATGAATGAATTTAAACGGTGGGTGCCCACCTTGAAGGCCGTCTGTCTCATCGGGAATAAAGATGAAAGAgccgCGTTCATACGTGATGTGATGATGCCTGGTGAATGGGATGTATGCGTTACCTCATATGAGATGGTGATTCGGGAGAAATCTGTGTTTAAGAAGTTTAACTGGCGCTACCTGGTTATCGACGAGGCTCATCGCATCAAGAATGAGAAATCAAAGTTGTCAGAGATCGCGCGTGAGTTTAAGACGACCAATCGTCTGTTGTTGACTGGGACCCCACTGCAAAATAATCTACACGAGCTCTGGTCGCTTTTGAACTTCCTGCTGCCTGATGTGTTCAACTCTGCCAGTGATTTTGATTCATGGTTTGACACAAACTGCCTGGGTGACCAGAAGCTGGTTGAAAGACTTCATGCTGTTCTGCGTCCATTCCTGCTGCGCCGTATCAAAGCAGAGGTGGAGAAGAGTCTTCCTCCCAAGAAAGAGGTGAAGATTTACCTGGGGCTCAGTAAAATGCAAAGGGAATGGTACACACGTATTCTGATGAAGGATATTGACATCCTGAACTCTGCTGGAAAGATGGATAAGATGCGACTTCTGAATATTCTGATGCAGCTGCGAAAATGCTGCAACCATCCATACCTGTTTGACGGGGCAGAGCCTGGTCCTCCATACACCACGGACACACACTTAGTCATCAACAGCGGCAAGATGGTCGCTCTGGATAAGCTTCTGCCTAAAGTGCAAGAGCAAGGATCCAGAGTGCTAATATTCAGCCAGATGACGCGTGTGTTAGATATTCTGGAAGACTATTGCATGTGGAGAGGCTTCGAGTACTGCAGATTGGATGGCAATACACCTCATGAGGCCAGAGAGCAAGCCATAGATGCTTTTAACGCCCCGAACAGCAGTAAATTTATCTTCATGCTGAGCACACGGGCAGGTGGGCTGGGGATTAATTTGGCTACAGCTGACGTGGTGATTCTCTACGACTCAGACTGGAACCCACAGGTGGACTTGCAGGCCATGGACCGTGCTCACCGAATTGGACAGAGGAAACCAGTTAAAGTGTTCAGGTTGATCACAGACAACACAGTGGAAGAGAGAATTGTGGAGAGAGCCGAGATGAAACTACGGCTGGACTCCATAGTCATTCAGCAAGGACGGCTGATTGATCAGCAGAACAAACTTGGGAAGGATGAAATGCTACAGATGATCCGACATGGAGCAACACACGTTTTTGCCTCTAAAGATAGTGAACTAACGGATGAAGATATCGACACCATTCTGGAAAGAGGAGCCAAGAAGACGGCTGAGATGAACGAGCGCATGCAGAATCTCGGCGAGAGCTCACTAAGGAACTTCACCGTGGACACAGGAGCCACAGAGACCAGCCTTTACAACTTTGAAGGAGAGGATTACAGAGAGAAACAGAAAGTTGGTGTTTTCATATTTGGTCacttaatatttgtgcatattGCAGTTCTTAAGTCCATTAACCTTAGTTTGATCGAATGGATTGAGCCTCCTAAGAGAGAAAGGAAGGCCAATTATGCTGTAGATGCTTACTTCAGAGAAGCGCTGCGAGTCAGCGAACCAAGAGCCCCGAAGGCTCCTCGGCCTCCAAAACAACCCAACATCCAGGACTTTCAATTCTTTCCACCACGTCTCTTTGAGCTGCTTGAGATGGAGATTCTTTACTACAGGAAAACCATTGGATacaaaGTTCCACGTAGTCCAGATATTCCAAATTCAGCACAGGTCCAGAAGGAGGAACAAAGAAAGATCGACGAGGCAGAGCCCCTTTCTCCTGAAGAAACAGAGGAAAAAGAGAAACTACTCACACAAGGATTCACAAACTGGAACAAGCGTGATTTCAATCAGTTTATTAAAGCTAATGAGAAGTACGGTCGTGATGACATCGACAACATCGCCAGAGAGGTGGAGGGCAAGACCCCTGAAGAAGTCATGGAATACTCAGCTGTGTTTTGGGAGCGCTGTAACGAGCTGCAGGATATTGAGAAGATTATGGCTCAGATAGAGCGCGGAGAAGCTCGCATCCAGAGACGCATCAGCATCAAGAAAGCGCTGGACGTCAAGATAGCGCGCTACAAGGCCCCATTCCATCAGCTCCGCATCCAGTATGGCACAAATAAAGGAAAAAACTACACAGAGgaGGAGGACAGGTTTCTGATTTGCATGTTGCATAAGATGGGCTTTGATAAAGAATATGTCTATGAAGAACTTCGACAGTGTGTACGAAATGCGCCTCAGTTCAGATTCGATTGGTTCATCAAGTCCAGAACTGCCATGGAGCTGCAGCGCCGTTGTAACACACTCATTTCTCTCATTGAGAAAGAGAACATGGAGATAGAGGAGAAAGAGCGAGCTGAGAAAAAGAGAAGAACACCCAAAGGACAATCAGCTCAAAAGCGTAAAGCAGAAGTGTCATCTGAGAAAAAGGAGAAGAAAGCTCGTACCTGACTCCTGTGCCCGCAGCTCTTTGCTCCTCATTATGAAGCACTACAATAATCAGACGCCTATCTACAGCATTTTGCAGTTACGTTTTTATCTGTTATATCTGTCACTCAACggcagtttattaaaataagtGTCAGTTTTAGCAACACTTAAAGCTTTTTTGGGACGTATTAAACACTTGTCTTCTGTTGAATCTTGTCCCACAGGCTGCACACATGTTGGCAGCTACACAACATTTTTGCTAAAGCTTGTTTTTATTcatggtttttgtttttctaaatggTCCATGTTTAAATCAACATTACCATTTATTTAGCATGTTACAAATAGGCTTTTAAGCCAGTTCCAATCTTGTGTGTTTTATAAATGAAACCTTTTTGTTTTTGCCTGAAACTCTGTTATGTTTAATGCCTCTGTGATCAGCACCTTAATCCATGTGATCTGTAGCTTTGCACATCCAGTCTTCTTAAGCTCTTTTATACATTCATGTGCCATTTTAATGTTGCGTTTAAGTTATTTTACACATTCTGGTTTGAACCTCTCCTGATCTTTGTATGTACaggttcagtattattataaaaaaataaactggttGGTTTGTTTAAA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0016589 NURF complex cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0016887 ATPase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070705-296 Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within neural plate anterior/posterior regionalization and primitive erythrocyte differentiation. Predicted to be active in nucleus. Orthologous to human SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1).

Ensembl:

ensembl_id ENSDART00000020725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061982 lncRNA downstream 487 21609358 ~ 21852227 (-) False XLOC_030984
TCONS_00061983 lncRNA downstream 499 21756657 ~ 21852215 (-) False XLOC_030984
TCONS_00061984 lncRNA downstream 499 21797940 ~ 21852215 (-) False XLOC_030984
TCONS_00061985 lncRNA downstream 499 21812085 ~ 21852215 (-) False XLOC_030984
TCONS_00061986 lncRNA downstream 499 21818946 ~ 21852215 (-) True XLOC_030984
TCONS_00061987 lncRNA upstream 38454 21926822 ~ 21933493 (-) False XLOC_030987
TCONS_00061988 lncRNA upstream 38454 21926822 ~ 21934278 (-) True XLOC_030987
TCONS_00060217 lncRNA upstream 151909 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00060218 lncRNA upstream 151909 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060220 lncRNA upstream 193227 22081595 ~ 22082807 (-) True XLOC_030992
TCONS_00060205 mRNA downstream 328463 21296567 ~ 21524251 (-) False XLOC_030983
TCONS_00060204 mRNA downstream 328463 21296567 ~ 21524251 (-) True XLOC_030983
TCONS_00060203 mRNA downstream 430324 21295747 ~ 21422390 (-) False XLOC_030983
TCONS_00060201 mRNA downstream 787620 21059459 ~ 21065094 (-) True XLOC_030980
TCONS_00060200 mRNA downstream 808021 21033771 ~ 21044693 (-) True XLOC_030979
TCONS_00060210 mRNA upstream 51365 21939733 ~ 22001053 (-) False XLOC_030988
TCONS_00060211 mRNA upstream 52558 21940926 ~ 21970881 (-) False XLOC_030988
TCONS_00060213 mRNA upstream 63513 21951881 ~ 22001003 (-) True XLOC_030988
TCONS_00060214 mRNA upstream 123207 22011575 ~ 22019061 (-) True XLOC_030989
TCONS_00060215 mRNA upstream 132774 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060206 other downstream 115369 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 559469 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060189 other downstream 1407041 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060188 other downstream 1407041 20444226 ~ 20445673 (-) True XLOC_030970
TCONS_00060186 other downstream 1443762 20408836 ~ 20408952 (-) True XLOC_030968
TCONS_00060212 other upstream 55014 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060221 other upstream 199288 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060223 other upstream 346039 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060225 other upstream 547418 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060226 other upstream 548943 22437311 ~ 22438595 (-) True XLOC_030997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_00932339_00951205.mRNA False 2939 mRNA 0.46 17 CI01000339 931680 ~ 951205 (-)