XLOC_031746 (cacna1ib)


Basic Information

Item Value
gene id XLOC_031746
gene name cacna1ib
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 515181 ~ 543693 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062209
GAGCGAGTCCTCCTCACCGTCTCCAACTATGTGTTCACTGCCATCTTTGTGGCCGAGATGACGGCCAAGgtggtgTCGAAGGGTCTGTATCTGGGTGAGCGGGCGTATCTGCGCAGCAGCTGGAATATTCTGGACGGGTTTCTGGTCTTTGTGTCTCTGGTTGACATTGTGGTGTCGATGACGGGTGGAGCCAAGATTCTGGGGGTCCTGCGGGTGCTGAGGCTGCTGAGGACGCTTCGCCCACTCAGGGTGATCAGTCGAGCTCCAGGGCTGAAGCTGGTGGTGGAGACTCTGATCACGTCACTGAAGCCCATCGGGAACATCGTCCTCATCTGCTGCGCTTTCTTCATCATCTTCGGCATTCTGGGGGTTCAGCTCTTCAAAGGGAAGTTCTATTACTGTGTTGGTCTGGATGTGAGAAATGTCACCAATAAATCCGACTGTCTCTCCGCCAATTACCGCTGGGTTCATCACAAGTACAACTTTGACAACCTGGGGCAGGCTCTGATGTCTCTGTTTGTGTTGGCGTCTAAAGATGGATGGGTAAACATCATGTACCACGGGCTCGACGCCGTCGGGATCGACCAGCAGCCGGTCATCAACCACAACCCCTGGATGCTGCTGTACTTCATCTCGTTCCTGCTGATCGTCAGCTTCTTCGTGCTCAACATGTTTGTTGGTGTGGTGGTGGAGAACTTCCACAAGTGCCGTAAGCAtcaggaggtggaggaggagcgCCAGCGGGTGGCGAAGCGCCTCAAGCGCATGGCCAAGAGGAGGCACAaggcTCAGTTTGCCCCGTATTACGCCTCATACGGTCGTGTTCGTCTGATGATCCACTCGTTCTGCACCAGTCATTATCTGGACCTCTTCATCACCCTCATCATCTGCGTTAATGTGGTCACCATGAGTCTAGAGCACTACGACCAACCACAGTCTCTGGAAACCGCACTGAAATACTGCAATTACTTCTTCAGCTGCACGTTTGTGATCGAGGCCATGCTGAAGCTGGTGGCGTTCGGCTTCAGACGCTTCTTTAAGGACAGgTGGAATCAGCTGGATCTGGCGATTGTTCTGTTGTCTGTGATGGGAATCATTCTGGAGGAGATTGAAATAAGCGCTTCACTTCCCATCAATCCCACCATCATCCGCATCATGAGGGTCCTGCGCATCACCCGCGTTCTGAAGCTGTTAAAGATGGCCACCGGGATGCGGGCTCTGCTGGATACTGTGGTGCAGGCTCTAccgcagGTGGGGAATCTGGGTTTGCTCTTTGTTCTACTCTTCTTCATCTACGCTGCACTCGGTGTTGAGCTGTTTGGAGAGCTGGtgtgtAATGAGGACTACCCGTGTGAAGGAATGAGCCGGCACGCCACCTTTGAGAATTTCGGCATGGCGTTCCTCACACTCTTCCAGGTGTCCACCGGAGACAACTGGAACGGCATCATGAAGGATACTCTGCGTGAGTGTCCGCCGGGTGACAGCTCCTCCTGTAACTCCAGCCTGCAGTTCATCTCTCCGCTGTACTTCGTCAGTTTCGTGCTGACGGCGCAGTTCGTGCTGATTAACGTGGTGGTGGCGGTGCTGATGAAGCATCTGGACGACTCCAATAAAGAAGCGATCGAGGACGCCGAGATGGAGGAGGAGATGGAGAAGGAGCGGGAGAAGGAGCTGGCGCAGGGCGGCCTCTGCTGTCTGGGTCGTTTGGACCGTTTGACCACGACTGATGCGGGAGAGAAGAGCGGCTGTGGGAACAGACAGGCGGCGACAGCGGCggtgcacagcaacaaccagagcgcacacacaccgcacactaacacacaacacacactgcaggaGAGGAGACTCTACTCACCCGcacaggtgacacacacacacacacatacattgacCAGCACTGCAATGCActtcatgcacgcacacacacacacatacattgaccaccaccgcacacacacacacatacattga
>TCONS_00062210
gtggtgTCGAAGGGTCTGTATCTGGGTGAGCGGGCGTATCTGCGCAGCAGCTGGAATATTCTGGACGGGTTTCTGGTCTTTGTGTCTCTGGTTGACATTGTGGTGTCGATGACGGGTGGAGCCAAGATTCTGGGGGTCCTGCGGGTGCTGAGGCTGCTGAGGACGCTTCGCCCACTCAGGGTGATCAGTCGAGCTCCAGGGCTGAAGCTGGTGGTGGAGACTCTGATCACGTCACTGAAGCCCATCGGGAACATCGTCCTCATCTGCTGCGCTTTCTTCATCATCTTCGGCATTCTGGGGGTTCAGCTCTTCAAAGGGAAGTTCTATTACTGTGTTGGTCTGGATGTGAGAAATGTCACCAATAAATCCGACTGTCTCTCCGCCAATTACCGCTGGGTTCATCACAAGTACAACTTTGACAACCTGGGGCAGGCTCTGATGTCTCTGTTTGTGTTGGCGTCTAAAGATGGATGGGTAAACATCATGTACCACGGGCTCGACGCCGTCGGGATCGACCAGCAGCCGGTCATCAACCACAACCCCTGGATGCTGCTGTACTTCATCTCGTTCCTGCTGATCGTCAGCTTCTTCGTGCTCAACATGTTTGTTGGTGTGGTGGTGGAGAACTTCCACAAGTGCCGTAAGCAtcaggaggtggaggaggagcgCCAGCGGGTGGCGAAGCGCCTCAAGCGCATGGCCAAGAGGAGGCACAaggcTCAGTTTGCCCCGTATTACGCCTCATACGGTCGTGTTCGTCTGATGATCCACTCGTTCTGCACCAGTCATTATCTGGACCTCTTCATCACCCTCATCATCTGCGTTAATGTGGTCACCATGAGTCTAGAGCACTACGACCAACCACAGTCTCTGGAAACCGCACTGAAATACTGCAATTACTTCTTCAGCTGCACGTTTGTGATCGAGGCCATGCTGAAGCTGGTGGCGTTCGGCTTCAGACGCTTCTTTAAGGACAGgTGGAATCAGCTGGATCTGGCGATTGTTCTGTTGTCTGTGATGGGAATCATTCTGGAGGAGATTGAAATAAGCGCTTCACTTCCCATCAATCCCACCATCATCCGCATCATGAGGGTCCTGCGCATCACCCGCGTTCTGAAGCTGTTAAAGATGGCCACCGGGATGCGGGCTCTGCTGGATACTGTGGTGCAGGCTCTAccgcagGTGGGGAATCTGGGTTTGCTCTTTGTTCTACTCTTCTTCATCTACGCTGCACTCGGTGTTGAGCTGTTTGGAGAGCTGGtgtgtAATGAGGACTACCCGTGTGAAGGAATGAGCCGGCACGCCACCTTTGAGAATTTCGGCATGGCGTTCCTCACACTCTTCCAGGTGTCCACCGGAGACAACTGGAACGGCATCATGAAGGATACTCTGCGTGAGTGTCCGCCGGGTGACAGCTCCTCCTGTAACTCCAGCCTGCAGTTCATCTCTCCGCTGTACTTCGTCAGTTTCGTGCTGACGGCGCAGTTCGTGCTGATTAACGTGGTGGTGGCGGTGCTGATGAAGCATCTGGACGACTCCAATAAAGAAGCGATCGAGGACGCCGAGATGGAGGAGGAGATGGAGAAGGAGCGGGAGAAGGAGCTGGCGCAGGGCGGCCTCTGCTGTCTGGGTCGTTTGGACCGTTTGACCACGACTGATGCGGGAGAGAAGAGCGGCTGTGGGAACAGACAGGCGGCGACAGCGGCggtgcacagcaacaaccagagcgcacacacaccgcacactaacacacaacacacactgcaggaGAGGAGACTCTACTCACCCGcacaggagaaCCAGTGGCTGGAGAGCGTCTCTCTGCTGATGAAGGACTCTCTGGATGGAGAAATGCAGATGATTGATAATCTGTCCGGCTCGGTGTTCCACCATTActgctctccaccaatcagacgagGCGGCAGGAGCCAATCAGGAGAGatccgGCTGGCAGAGGTGGAGCAGACGTCTCTGATGTCAGAGCAGCTGTCTGATAAATCCTCTTCACCCGCTCTGCCTGATGACATCAGTCTGGACGAACACAGCGACTGTCAACTGCTGGACACGGGCTggaaggaggagCAGGGCAGCAGTGAGGCTTTGAGTCCACTGATAGACAGACGGTCGACCCTTCATCTCCATTCTCCAGatggcAGTAGAGACGGTCAGACGTCTTCATCTCTCTTCCATCTTCCGGCTGAGTTCTTCCACCCCACCAGCGCTGCTTTCCCCCAGCGCCGCCCAGCACCCGGAGCAGCTCTGCCGGGATCCAGACACACGTCTCCAGCCTCTTGGGCCTCGCTTCGGTCCCCGGGGGCCGACAGCAGAGTCATGGGCTCTCAGGCGTCCTACAGTAATTCCTCACTGGCCACAGGCAGTTCTGTGAGCAGCTTACAGGCCATGCCAGAAGAAAGCGTTTCTGCATCGGGAGAACAAACCGTGCCCAAAATCTGCAGATCCCACATTCCCCATCAGAAACCTCACGCTGTACAGTCTGTGTCCATCCTCCAGTCCAGCAGGGGGCACCAGAGGAGTCGAAGCAGAAATACTGACTGCGCAAACAGAATCTCACAGGACTCCACAGAGCCCTCGGATGACAATCCCGAACAGTTGTCGGATAACCTGAGCAGCTTTTCTCTGACATCTCTGCACCCGCCTGACTCTCTGGCGCCACCGCTGGCCAAAAAGTGCAACAGCACCGGGAGTTTAGCGCAAATGAGCCGGAATAAAGGCGCAAAGTGCTTTTCTGGATTTGATCCCTGGATTGAAACAACAAGTGAGGAAACTGAACGTGACGCTTCGCCGGTTGGTGCTAAAACCTGCAGCCAGACTGTGAGTTCCAGCTGTCGTCAGAACAGATGA

Function

symbol description
cacna1ib Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport; flagellated sperm motility; and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062209 False 1971 mRNA 0.55 13 515181 533548
TCONS_00062210 True 2862 mRNA 0.55 17 518979 543693

Neighbor

gene id symbol gene type direction distance location
XLOC_031745 LO017974.1 coding upstream 10898 475264 ~ 504283 (+)
XLOC_031744 NA coding upstream 62144 445633 ~ 453037 (+)
XLOC_031743 cyth4b coding upstream 105413 392815 ~ 409768 (+)
XLOC_031742 si:zfos-169g10.3 coding upstream 140080 369991 ~ 375101 (+)
XLOC_031741 rbfox2 coding upstream 172965 296130 ~ 342216 (+)
XLOC_031747 zgc:92360 coding downstream 40939 584632 ~ 598165 (+)
XLOC_031748 uts2r4 coding downstream 54976 598669 ~ 599688 (+)
XLOC_031749 kynu coding downstream 68637 612330 ~ 627846 (+)
XLOC_031750 NA coding downstream 415564 959257 ~ 960829 (+)
XLOC_031751 NA coding downstream 520245 1063938 ~ 1079773 (+)
XLOC_031752 NA non-coding downstream 741772 1285465 ~ 1285894 (+)
XLOC_031753 NA non-coding downstream 825357 1369050 ~ 1369364 (+)
XLOC_031754 NA non-coding downstream 832938 1376631 ~ 1377900 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01050863_00000790_00004073 CACNA1H, CACNA1I, CACNA1G coding CI01050863 null 790 ~ 4073 (+)