XLOC_031751


Basic Information

Item Value
gene id XLOC_031751
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 1063938 ~ 1079773 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064770
GCCCAATCAACAACAAAGCTCCCACAACACGAAATATGTTTGCACCGAGGAAACTTGACGGGAAAGACTGTCCACGTACGTTATATCATGTGATTACGGGCTGTAAATCAAACTTGTGTGTTTTTGATAGTCATGTTGAGTTTATGTACCCGATTTTCAGTTTCCCGCGTTTTGCAGTGAACCGTTTACACGAGCAACAGTAAGCATGTTTAGCGCATTTTAAAAAAGATGTTTAATAAGCAACGTTAAACAACAACAAAGTCCTTACAACACGGATTATGTTTGAAATGAGGAAACTTGACAGGAAAAAGACTGTCCCGgtccagaactgtcttgagcatctgtcagCATTACCGAAGAGCGTCTCACGCCTCTAAAAAGCCACCATGTTCATTGCGATTCATTCTCGTCTTCTGAAGTgcaactcatttattagagaagaaaaaaagactACAGTGGCTTCTCCTGTGACTGCAAAACAACGGCATATTCTACTACGGCAATtatcacctcaggta
>TCONS_00064596
GTGGttaatgtttcattattattatgtaatttttttaggtccagaactgtcttgagcatctgtcagCATTACCGAAGAGCGTCTCACGCCTCTAAAAAGCCACCATGTTCATTGCGATTCATTCTCGTCTTCTGAAGTgcaactcatttattagagaagaaaaaaagactACAGTGGCTTCTCCTGTGACTGCAAAACAACGGCATATTCTACTACGGCAATtatcacctcagATGAGTTTATGTGTGCAGGGCATCAGAGCGTGAAGCCTGACGACTCCAGTCCACCTTCCCATAAATCACAGCGGTTTTAATCATACCTGCCACCTCCACActacagtctctctctctctcacacacacacacacacacacacgcacacaatgcACTCTTTTCTGTCTTTAAGTCTCTCtctcactcgcacacacacattcatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064770 False 518 lncRNA 0.41 2 1063938 1065154
TCONS_00064596 True 436 lncRNA 0.44 2 1064919 1079773

Neighbor

gene id symbol gene type direction distance location
XLOC_031750 NA coding upstream 103109 959257 ~ 960829 (+)
XLOC_031749 kynu coding upstream 436092 612330 ~ 627846 (+)
XLOC_031748 uts2r4 coding upstream 464250 598669 ~ 599688 (+)
XLOC_031747 zgc:92360 coding upstream 465773 584632 ~ 598165 (+)
XLOC_031746 cacna1ib coding upstream 520245 515181 ~ 543693 (+)
XLOC_031752 NA coding downstream 205692 1285465 ~ 1285894 (+)
XLOC_031753 NA coding downstream 289277 1369050 ~ 1369364 (+)
XLOC_031754 NA coding downstream 296858 1376631 ~ 1377900 (+)
XLOC_031755 NA coding downstream 448952 1528725 ~ 1535463 (+)
XLOC_031756 acvr2ab coding downstream 645116 1724889 ~ 1740371 (+)
XLOC_031744 NA non-coding upstream 610901 445633 ~ 453037 (+)
XLOC_031758 NA non-coding downstream 707901 1787674 ~ 1788044 (+)

Expression


Co-expression Network