XLOC_031752


Basic Information

Item Value
gene id XLOC_031752
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 1285465 ~ 1285894 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064771
CGGAGACGTGTGTTCATGAGATGGAGGCAGTTGCTCGTTGATTCTGTGCAAAATTCGGCAGAAACACAAGTGGCAGAGAGAGCGGATTACATTTGTACAAAATCATAAAACATAGTAAACACGATTCGAGTGTCCTTTTAATCCGCTGCCGCGTTCATTGGCTCGGTCACATGACTTCATAAGAGGTCCAAAGCATCCTCAGTGTacacacattgagaTCAGCTGGGTAAAGCCATGGTGTCGATCACCTGCTCCAGTTTAGCCCTCAGTCTCTGCCGGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064771 True 281 lncRNA 0.48 2 1285465 1285894

Neighbor

gene id symbol gene type direction distance location
XLOC_031751 NA coding upstream 205692 1063938 ~ 1079773 (+)
XLOC_031750 NA coding upstream 324636 959257 ~ 960829 (+)
XLOC_031749 kynu coding upstream 657619 612330 ~ 627846 (+)
XLOC_031748 uts2r4 coding upstream 685777 598669 ~ 599688 (+)
XLOC_031747 zgc:92360 coding upstream 687300 584632 ~ 598165 (+)
XLOC_031753 NA coding downstream 83156 1369050 ~ 1369364 (+)
XLOC_031754 NA coding downstream 90737 1376631 ~ 1377900 (+)
XLOC_031755 NA coding downstream 242831 1528725 ~ 1535463 (+)
XLOC_031756 acvr2ab coding downstream 438995 1724889 ~ 1740371 (+)
XLOC_031757 myl9b coding downstream 501266 1787160 ~ 1799561 (+)
XLOC_031744 NA non-coding upstream 832428 445633 ~ 453037 (+)
XLOC_031758 NA non-coding downstream 501780 1787674 ~ 1788044 (+)
XLOC_031759 NA non-coding downstream 514249 1800143 ~ 1808892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G343197 NA non-coding CI01000130 null 460362 ~ 463250 (-)