XLOC_031786


Basic Information

Item Value
gene id XLOC_031786
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3730843 ~ 3813374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062268
AAAACTATTAAGTCGTAAAAATGAGTTTTGAGTTGCATTGTTATTGTAATTCCGCCGTTCATCCAGCAGGAGGAGTGATGGATCCACTCTACAGTCCAACACTCCAACATGAAGATGCTCCACTGCAGATCTCTCATGCTAAAagctgcAAACACTCGACGGATTTGAGCTGTTCGTTCTGCTTTGATGATTGGACAGCGGTAATCTTCAAAGGCACAACTCTTCATTCTGACTGGCTGGAGTTCTGATCAAACTCCCGTGTGTTCACTTTACTCCAACATTCTCCCGCGATTCAAGAGGCGCAAGTTACCTCTCTTTTGGGAACTAAAGGATCGACAGACCCTCATAATGCACCATGACCCACTGCAGGCTTTCCTTCAGGATCGAACATCAAGCTCAACTCCAGAATCCATCAAATCATCTCCCTTGATGTTGCTGGAAGACACCTGTAATCGCATTGGCCGTGCATCCCAATCCATGGAGTCCTACATCCCATATGCTTCCCCAAATAAACTCTTCCATCCCTGGAGAAGTACTGACTCCACTCATCTATCCCAATCAACCTTCTCTATTCCTCCTTTACACCAGGACATGCCACTGACCGAACACTTTGACTGTTCACCCCTGAAGATGTTGCCTTGCCCATCCTCATGTATTTCAACCTGCGTACCCACACACACCGGACTCGTGCACGCGCAGAGACATTTGGCACGGGATGACATCCAATGGTGGAGCTCCGCCAATCACTCCTCGGCGCATTTTCAGCTCACACGTGGGTGGATTTTGGGTCAGCCAGAGTTTGGCCACTATCAGTCCCAAATCCTGCTGAACTCAAAGTCACGACAAAGCCGGAGATGCATGTGTCCTAATTGCCAGAAAAACGCCGACACGCCGGGCAGGAGAAAGCAGCACGCCTGCCACATACCAGGCTGCGCGAAGGTGTACGGAAAGACATCTCACCTGAAGGCGCACCTGAGATGGCACGCGGGGGAGAGGCCCTTCATCTGCAGCTGGATGTTTTGCGGGAAAAGTTTCACGCGCTCGGATGAGCTCCAGCGACACCTGCGCACACACACCGGGGAAAAGCGATTCACCTGCCCGGACTGCTCCAAGCGCTTCATGCGCAGTGACCACCTGGCCAAACACCTGAAGACACACCTGATGAGGAAGAACAGAGGGCTTTTTCCCATGCTGGATCACATCAACAAAACTCTTGCATCTTAAATATACTTCTGTAACCATTTACTGGATGTTGTCGTATGAGCTTTAAAATAAATAGGCTGTGAATGAAATCTGTGGTTCACGTTTTTAGTTTTCtccttttatttatgcttttgaactcTATTATGGAATCTTGttctttctttcaacaactttaaacattgaaaatgtacttttaaaaattgactttaattaacatttttaatagtttaaagtgatagaGTCCTATTTTCTGGGTTGGTGTTTTATGTTACAGTACAAACA
>TCONS_00062269
tttttatttattagggaGGGGGTGATTgcattatttacttaatttttatgtttttgtctttagtttaattgtttattcatattttattattaataaaaatggcccaagtatattattatttatgttatatattaatatttgtaaattatatttaatttaaaaaatgtttaaacttgATAGATAAAGATATACATGCAGGGCATAAATCataattaattattgtaatatatagGCAAGCAGTAGTTTTATGttcatatatttttgtttgtttgtttaaaagctAATTTTCCTCATCCCTGGAACTtgtatgtttaatttaaaatgtaaagtggTTGCCTTTCCATTGTTTGACtgcaataaatgaatgtataattgcaacttattaatttaattatgcaGTATCCAgagacaaaaaatacattttcataaaagaCCTAAACCACAATTGCTGTTTTAAATGTTGCAAATATATCTTTAGTGACAAACACACTTTGTAATACTTCTTTGATCCTTTCACTTAATCCAGATGCAATAATTCATTAATTGCATCCTTCATCTCTCCCCAAAATCACCCCCCTCAAAAATAACCAGttcttttatgatccagagctgcAAACACTCGACGGATTTGAGCTGTTCGTTCTGCTTTGATGATTGGACAGCGGTAATCTTCAAAGGCACAACTCTTCATTCTGACTGGCTGGAGTTCTGATCAAACTCCCGTGTGTTCACTTTACTCCAACATTCTCCCGCGATTCAAGAGGCGCAAGTTACCTCTCTTTTGGGAACTAAAGGATCGACAGACCCTCATAATGCACCATGACCCACTGCAGGCTTTCCTTCAGGATCGAACATCAAGCTCAACTCCAGAATCCATCAAATCATCTCCCTTGATGTTGCTGGAAGACACCTGTAATCGCATTGGCCGTGCATCCCAATCCATGGAGTCCTACATCCCATATGCTTCCCCAAATAAACTCTTCCATCCCTGGAGAAGTACTGACTCCACTCATCTATCCCAATCAACCTTCTCTATTCCTCCTTTACACCAGGACATGCCACTGACCGAACACTTTGACTGTTCACCCCTGAAGATGTTGCCTTGCCCATCCTCATGTATTTCAACCTGCGTACCCACACACACCGGACTCGTGCACGCGCAGAGACATTTGGCACGGGATGACATCCAATGGTGGAGCTCCGCCAATCACTCCTCGGCGCATTTTCAGCTCACACGTGGGTGGATTTTGGGTCAGCCAGAGTTTGGCCACTATCAGTCCCAAATCCTGCTGAACTCAAAGTCACGACAAAGCCGGAGATGCATGTGTCCTAATTGCCAGAAAAACGCCGACACGCCGGGCAGGAGAAAGCAGCACGCCTGCCACATACCAGGCTGCGCGAAGGTGTACGGAAAGACATCTCACCTGAAGGCGCACCTGAGATGGCACGCGGGGGAGAGGCCCTTCATCTGCAGCTGGATGTTTTGCGGGAAAAGTTTCACGCGCTCGGATGAGCTCCAGCGACACCTGCGCACACACACCGGGGAAAAGCGATTCACCTGCCCGGACTGCTCCAAGCGCTTCATGCGCAGTGACCACCTGGCCAAACACCTGAAGACACACCTGATGAGGAAGAACAGAGGGCTTTTTCCCATGCTGGATCACATCAACAAAACTCTTGCATCTTAAATATACTTCTGTAACCATTTACTGGATGTTGTCGTATGAGCTTTAAAATAAATAGGCTGTGAATGAAATCTGTGGTTCACGTTTTTAGTTTTCtccttttatttatgcttttgaactcTATTATGGAATCTTGttctttctttcaacaactttaaacattgaaaatgtacttttaaaaattgactttaattaacatttttaatagtttaaagtgatagaGTCCTATTTTCTGGGTTGGTGTTTTATGTTACAGTACAAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000005846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062268 False 1485 mRNA 0.47 3 3730843 3813374
TCONS_00062269 True 1949 mRNA 0.40 2 3809346 3813374

Neighbor

gene id symbol gene type direction distance location
XLOC_031785 ssb coding upstream 2149 3716666 ~ 3728694 (+)
XLOC_031784 phospho2 coding upstream 17746 3710865 ~ 3713097 (+)
XLOC_031783 ppig coding upstream 22457 3693441 ~ 3708386 (+)
XLOC_031782 klhl41b coding upstream 38563 3680651 ~ 3692280 (+)
XLOC_031781 col28a2b coding upstream 55046 3640381 ~ 3675797 (+)
XLOC_031787 NA coding downstream 2675 3816049 ~ 3826125 (+)
XLOC_031788 gad1b coding downstream 14377 3827751 ~ 3863452 (+)
XLOC_031789 gorasp2 coding downstream 50666 3864040 ~ 3875115 (+)
XLOC_031790 NA coding downstream 64298 3877672 ~ 3879215 (+)
XLOC_031791 dync1i2b coding downstream 121364 3934738 ~ 3956580 (+)
XLOC_031780 NA non-coding upstream 149552 3575051 ~ 3581291 (+)
XLOC_031776 NA non-coding upstream 308110 3419776 ~ 3422733 (+)
XLOC_031773 BX255959.1 non-coding upstream 565121 3165608 ~ 3165722 (+)
XLOC_031771 NA non-coding upstream 1110505 2617389 ~ 2620338 (+)
XLOC_031770 LO018168.1 non-coding upstream 1137343 2519973 ~ 2593500 (+)
XLOC_031792 CU914157.1 non-coding downstream 187943 4001317 ~ 4004456 (+)
XLOC_031798 NA non-coding downstream 704784 4518158 ~ 4520247 (+)
XLOC_031802 NA non-coding downstream 1384895 5198269 ~ 5399444 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005848 NA coding CM030142.1 CM030142.1 10374423 ~ 10377678 (-)