cdk5rap3 (cdk5rap3)


Basic Information

Item Value
gene id cdk5rap3
gene name cdk5rap3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18424541 ~ 18429150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564985.2
TCACGTTTTTCTATTGGTCCTTCGACTGGTAACGTGTCGTTTTGGGTGTAAATAGTGGAATAGCGGATTAACTTGAAGAAGTCGCAGAAATATAACTGCAATGTGCCAAGAATAATAAAAATCCAACAATTCCATGAACAGTTGAAGAGGCGATGGAGAATCTTCAAAATCTTCCTATTGACATACAGACTAGTAAGCTTTTAGACTGGCTGGTGGACCGACGACACTGCAGTCTGAAATGGCAGAGTGCTGTAATGAGCATCCGGGAGAAGATCAACGCTGCGATGCAGGACATGCCAGAGAACGAGGAGATCAAGGAGCTTCTCTCAGGGTCCTACATCCACTACTTCCACTGCTTGAGGATAGTGGACATCCTGAGGGGGACTGAGGCCTCTTCCAAAAACATATTTGGCAGATACTCCTCTCAGAGGATGAAGGACTGGCAAGAAATAGTGTCCCTCTATGAGGCAGACAATGTTTACTTGGCGGAGGTGGCCAGCTTGTTGAGCCGCACTGTGAGCTATGAGGGTCCGGCCCTGAGGAAGCAGGTAGCCAAGGCCCAGCAGCTTCAGCAGGAGTTGAGCCGGAGAGAGACTGAGTGCCAAAGCTCTGCCGCGGACCTGAGGGAGCGCTTCTACGCAGGCTGCAAGCAGTACGGCATCATGGGGGAAAATGTGGCTCGGGAGCTACAGGCTCTGGTGAAGGATCTACCAACGACTCTTGTGGAAGTGGGGAGGGACACAGCCAAGCTAGAGGAGCAAATCCAACTTTACACAGCCTTCACAAACTTTCTCTGTGACTGGGATGAGCCAGTGCTGCCCATGCTGACTTTCGCCCAAAAGAGAGGTAACCCCACGTTCTATGAATGGCGAACTGGAAAAGCACCAGCGGTCATCGAGAGGCCTGTAATGGAGGAGGCGCCCCCTGATACGGTCACAGAGGAAACGATTGACTGGGGTGACCTGGGGTGTGGGACAGGGGCAGAAGGGACACAAGATGTGATCAcggtggaggatggaggagtgGACTGGGGCATCAGCCTGGAGCCTGGCTCTGAGggcacagaggcaggtgtcattgaTTGGGGAGAGAGTGAAACCCCTATAGAAATTGAGATCTTAGATATGGGCACAGACTGTCCTGAGGGTGTGGCCAGGGGGGAGGATGCTCTGTCAATATTGGAGACCCCACAGACCCGCAGCCAGTACATCGACGAGCTGATGGAGTTGGAGGTATTCCTGACCCAGCGGCAGagtgagatgggagaggagggcaaTGTGGTGGCCATGTGTCAGTTCCAGCTGGCCCCCTCCATCATCCAGGGGCAGACCTGCCAGCGCATCCAGGAGATGCTGGCTGAGGTGCGCCACCTGCTGGAACGGCTGACCAACCTACGGATGCAGCACCTCTTCATGATCCAGGCCTCGCCACGGTACGTGGAGCGTGTCTCGGAGGTCCTGAGGCAGAAGCTGAAGCAGGCAGACATCCTCGTGCTGAAGCGGGCCACACTGGCCGAGAAGAGACAGGAAGCTCTGGAAGAGCAGGCCACCCTGGAGCCCCGCATCGACCTCCTGGCTCAGCGCACCCACCAACTCCACAAACTGATCGAAGCGGACATTTCAAAACGCTACAACAACCGGCCTGTCAACCTAATGGGAGTCAATGTGTAGCTGTTGTAGTTCACCCAGATTTGTGTAATCGCCATAGCTCCCtagaaaaaaaataatgtttgatttgatGTAAAGGTGTGTTGTTATGAATACTTTTTTCATGATCTGCTGTAAACAACTCTTCAAATAATA

Function

symbol description
cdk5rap3 Acts upstream of or within gastrulation; negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; and regulation of mitotic cell cycle. Is expressed in several structures, including digestive system; hatching gland; mesoderm; nervous system; and pharyngeal arch. Orthologous to human CDK5RAP3 (CDK5 regulatory subunit associated protein 3).

NR:

description
CDK5 regulatory subunit-associated protein 3

GO:

id name namespace
GO:0070586 cell-cell adhesion involved in gastrulation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564985.2 True 1802 mRNA 0.53 14 18424541 18429150

Neighbor

gene id symbol gene type direction distance location
pnpo LOC106589290 coding upstream 7795 18412240 ~ 18416746 (+)
tbx21 tbx21 coding upstream 28520 18379524 ~ 18396021 (+)
tbkbp1 tbkbp1 coding upstream 100909 18251830 ~ 18323632 (+)
cdk5r1b LOC106579323 coding upstream 328714 18088482 ~ 18095827 (+)
LOC110491490 LOC106579325 coding upstream 399899 17994355 ~ 18024642 (+)
nfe2l1b nfe2l1 coding downstream 10863 18440013 ~ 18447730 (+)
LOC110491501 snx11 coding downstream 26126 18455276 ~ 18477327 (+)
calcoco2 LOC106579308 coding downstream 157916 18587066 ~ 18595625 (+)
LOC118939515 NA coding downstream 173122 18602272 ~ 18606647 (+)
msl1b LOC106579305 coding downstream 184506 18613656 ~ 18621851 (+)
G1348468 NA non-coding upstream 51580 18372633 ~ 18372961 (+)
G1348466 NA non-coding upstream 56754 18367583 ~ 18367787 (+)
G1348461 LOC106582599 non-coding upstream 75055 18349204 ~ 18349486 (+)
G1348381 LOC106579322 non-coding upstream 197930 18224754 ~ 18226611 (+)
G1348351 NA non-coding upstream 232950 18186381 ~ 18191591 (+)
G1348865 NA non-coding downstream 89695 18518845 ~ 18519056 (+)
G1348869 NA non-coding downstream 93358 18522508 ~ 18522810 (+)
G1348870 NA non-coding downstream 93756 18522906 ~ 18523194 (+)
G1348872 hoxb1 non-coding downstream 94418 18523568 ~ 18524035 (+)
G1348875 hoxb3 non-coding downstream 96502 18525652 ~ 18526637 (+)
LOC110491483 LOC106579330 other upstream 821070 17596160 ~ 17623382 (+)
LOC110492842 LOC106579341 other upstream 1150561 17235828 ~ 17305959 (+)
LOC110491464 LOC106579031 other upstream 1267871 17152137 ~ 17156699 (+)
G1346758 NA other upstream 1478297 16945928 ~ 16946244 (+)
G1345431 NA other upstream 2881004 15542391 ~ 15543537 (+)
G1348897 LOC106579309 other downstream 126027 18555177 ~ 18555452 (+)
LOC110491516 LOC106589273 other downstream 323473 18682058 ~ 18760420 (+)
LOC110491534 LOC105006846 other downstream 709877 19138817 ~ 19141680 (+)
G1350066 NA other downstream 1308012 19737162 ~ 19738034 (+)
G1350275 NA other downstream 1601580 20030730 ~ 20037978 (+)

Expression


Co-expression Network