LOC110491490 (LOC106579325)


Basic Information

Item Value
gene id LOC110491490
gene name LOC106579325
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17994355 ~ 18024642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564973.2
tggAGAGAAAAAGATATCTACCTTAGGAAAGAAcctcagagagggagggaaggagaggacgggtaggagcgtgtgtgtgcgtttgtgtatgtgtgagagagagagacttactcTCTTAACTACAAGGAGCCAGACACACTTCCCTGGCCCGACTCAAAGAAGGGGGAAAAcaggagttttttttttgttccttCAATTTCATTTAAATTCCCCTCCCTCAACAATCAAGCTTTTGCTAAAGCTTCTCTTCCAGGAAGTCTGTTCTTCATTCCCCATTGGACATTCTGTATTGTATTGATCCATTTCCACTCCTATCACCACAAGGCATACCTCATGGATTTGTACCTGATTGGATATATGATGTGTGTGTGGCTGTCCAGCTGGCGGGTGCTTGGAGGTTATCCCATCTGGTGGTCCCTAGCCTTGGGGCAGCAGTACTCGTCTCTGGGCTCCCAACCCATCCTGTGTGGCTCTATCCCCGGCCTGGTGCCCAAGCAGCTGCGCTTCTGTCGCAACTACATCGAGATCATGCCCAGTGTGGCCGAGGGCGTGAAGCTGGGCATCCAAGAGTGCCAGCACCAGTTTAGGGGGCGCCGCTGGAACTGCACCACCATCAAGGACAACCTGGCCATCTTCGGGCCCGTACTGGACAAAGCCACCAGAGAGTCGGCGTTTGTCCACGCCATCGCCTCTGCGGGCGTGGCGTTTGCTGTAACGCGGTCCTGCGCTGAGGGCACGTCCACCATGTGTGGCTGTGATTCCCACCACAAGGGTCCCCCGGGGGAGGGCTGGAAGTGGGGCGGCTGCAGCGAGGACGCTGAGTTCGGGGTGCTGGTGTCCAGAGAGTTTGCCGATGCTAGAGAGAACCGGCCTGATGCACGCTCTGCTATGAACCGGCACAACAACGAGGCAGGACGCACGACCATCCTGGACCACATGCACCTTCGCTGTAAATGCCATGGTCTGTCTGGCAGCTGCGAGGTGAAAACGTGCTGGTGGGCACAGCCCGACTTCCGCATGCTGGGTGACTACCTGAAAGACAAGTATGACAGCGCCTCGGAGATGGTGGTGGAGAAGCACCGAGAGTCGCGTGGCTGGGTGGAGACGCTGCGCGCCAAGTATGCCTTCTTCAAACACCCCACGGAGCGTGACATGGTCTACTACGAGGGCTCGCCCAACTTCTGCGAGCCCAACCAGGAGACGGGCTCGTTCGGCACCCGCGACCGTGCCTGCAACTTGTCCTCGCACGGCATCGAGGGCTGTGACCTGCTCTGCTGCGGCAGGGGCCACAACACCCGGACTGAGAAGCGAAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGTGTGCGTGTCTACGACGTACACACATGCAAGTGAGAGCCTGTGCGCTCgctcagacagacggacagaatGATGGACCATAGTGCCCAtcgcagacacacaaacacacacactgcagtccttgcatatatacagacagacagacagacaggcaccaaTGAGGAATGGCACTTTGTACTGGAACTCTATTCTTCTGCACCcttgtaataaaataaaaaaaacatatcctTCTTCCAAGCCctgcatcctcctcctctattTGAGTAGGTAGTTCCACGAACGGACATATGGGAGGGCCCATTTCCTTTGGAACAAGCTGTCAGTTTGACCTGTTCCCATTCCTGCACCATTGGGCCATGACCCCTTCTTTATTTATTTCCCCCACACACGGCTGTGCAGTAACCGATGACTTTCCAGACCGTTGCTATCGAATTGACATATTTTTAACTAACACCTGATTCCACCAGTCAATCACCTGGCTGGTCGACTATTGAGAACTAAACCAACTCTCCAACAGTACTAAACACACAGCAACAGCCCAGGAACCTACCATTTTAACTACTGAACCCACTGAGTGGCTGTTACTGGACCCTTCCCTCCTAAACTAAACTACTGAGCTGATGAAATCTCCTCTTTCCCAACCCCTGCACACTGTACTGATACTGAACTACAGCTGTCGCCTGGCTGGGATGCCTGATGCCTGGAAGATATGCTAGAGCCTGATTTTATAGCCCCACATTTCTGAAATATTAGCAATGGGCCAGGACTGGAGGTGGTATGCAGGAGGGGACATGTGCAGGAAACAAACACACTCGTTTCCACTAACGAACATTTCTGCACGTATGCACTATTCAGCTGAACAAGAACTGTCTAGAGGTAGTGAAACGTTGGCTATTGCTATTTATGAGAGAAAATGCATTCTTCTTGTCTTAACCAGTTACGTtctaacatacagtaacacaaCTGAGATTGTTCATCTCATTCAGATCAGAGACGTTTTGCTGTAATTTCCCCTTGAGTATGAAACAAGACAGATTTACAATATTTGAGGAAATTATAatgaattataaactgggtggtttgaagccctgaatactgattggctgaaagccatggtatatcagaccgtataccacgggttcgacgaaacatgtatttttactgctctaattatgttagtaaccagtttataatagcaataagtaacctctggggtttgtgctatatggccaatataccacggctaagggctgtgtccaggcactccgcgttgcgtcgtacATAAAaacagccattagccgtggtatattagccatatccCACACCCCTCGGGCCTCATTGCTTAAATGTCATATAGAACAAAACATTCACAACAAACAGGTAGGGTTCAGGTATGAGACTTTATTGGATTAATTCGTCATCAGTTTATTTTGCACTTGCAATAGGCCTAATGCTAATTAATTATTCTACTCATAGCAGTCATACTACGACAATGAGATCATTtatccaacacactgacagtCCATTTTATTATGTTCCTCATAATACTGTGAAGTCCTTGTCTAAGCTAAACCCTTCTCTCACCAGTGAAATGTGATGACAAGTGGAGaccagaggggagagagcagaaaGTGTCCTAATAGGCCTCTttcctcatctccttccctggATTGCCACTGATGTGAAATGTCTTGACAATAGAAGCAATATGGTGGAATCCTGTTCAGAGATTTGAAGTATCTGTGGGAAACAACTTAAGGAGACGAGGGTAGGGGGGGTTACTTAGTGTTTTGGGACACAGCCAATGTGAGTGAaggtgaatgtgtgtttgtgctgcTTCGAGTGAcgggtgttagggttagagggaTGGCAGGCAGGCATGCTGGCTTCACAACAGTGGAACAACCTGTGAGAGGTTTCCACACAACATGTTCTGACAGTCCTACGTGCTTCCTATTCATTATATTtaacaacaaaaatacaacttACCTAGGTAGTGTAGACTCCTCCCTTTGTGACATAGCTTAGTATCTGCGTCACCCTCCAAAAGGCTCTCCCTACACGGGCCCTTTCTGTGTTCAGTTCCTTCCTTTCCTCACCGCTACATCCAAAGTTTTGTACAAAGGTTTTAAAGTTAATAATTCCCTTTTTATTTTATAATctgaaaatgttatgtttttataAATATAATTTATTATACAATGTATATATCTGTATGACTGAACTAAGA
>XM_021564974.2
CAGAAGACATTAGCAATACCCCTCCTGGAAATGTTGGTCACTGCAGTTAAGTAGCTTAGCCTACCTGCACTTTACTCAAGCTAAAGGGAGTTTGACAGCTTGTTGGGCATAATTTCTGCTCTCCATTCAACATCTTCATTGTTGCATGTGTGTAGCACCTGTGAGTAGCCTAGGCTAGCCTAAAACCAGGCATGCATTAGCATAGATTCAGGAATTAAATTGTCCATCTATTAACTGAAAACCGAATCCCCAGCCCTGTAACATTGCATGGATCTTACCTGATAACTTTTCATTGCCAAAAGTTACAACTTGTGTATTTTAGTGTAGGCGACATCATGCGAGAAGATTACAATCGGTAACAAGGCGCGGGAAGAAAAGGAACAGCACGAGACTGTTTTACTGATACAACGGCTGTCTGTTCAGCCGGTCTAGATAGTTCGTGTCGGTTTGCTCTTGTTGTGTTTTTGAAATATCACATAGTGGCGACTCTCTTTGATATGATATATGTTTGGTAAACCTTTACAAGATTAAAGTTAGCAACGTACAAATGGTGAAGGTCTAAATGGGGCGCCATGTTGCCCGAAGTTATGTTAACTCGTTGACAACTTGATTGGCATTTTCTGCGCTGTGAAAAACGTGTAGGCTATTTACATCAACAAGTAAACTTGAGCAATAATGGACCAAGCAACCACAAGTCTAGTTCCAGAAGTGTTCCTCGTGATGAGGGCTCCAACAAAATGGTCCCTAGCCTTGGGGCAGCAGTACTCGTCTCTGGGCTCCCAACCCATCCTGTGTGGCTCTATCCCCGGCCTGGTGCCCAAGCAGCTGCGCTTCTGTCGCAACTACATCGAGATCATGCCCAGTGTGGCCGAGGGCGTGAAGCTGGGCATCCAAGAGTGCCAGCACCAGTTTAGGGGGCGCCGCTGGAACTGCACCACCATCAAGGACAACCTGGCCATCTTCGGGCCCGTACTGGACAAAGCCACCAGAGAGTCGGCGTTTGTCCACGCCATCGCCTCTGCGGGCGTGGCGTTTGCTGTAACGCGGTCCTGCGCTGAGGGCACGTCCACCATGTGTGGCTGTGATTCCCACCACAAGGGTCCCCCGGGGGAGGGCTGGAAGTGGGGCGGCTGCAGCGAGGACGCTGAGTTCGGGGTGCTGGTGTCCAGAGAGTTTGCCGATGCTAGAGAGAACCGGCCTGATGCACGCTCTGCTATGAACCGGCACAACAACGAGGCAGGACGCACGACCATCCTGGACCACATGCACCTTCGCTGTAAATGCCATGGTCTGTCTGGCAGCTGCGAGGTGAAAACGTGCTGGTGGGCACAGCCCGACTTCCGCATGCTGGGTGACTACCTGAAAGACAAGTATGACAGCGCCTCGGAGATGGTGGTGGAGAAGCACCGAGAGTCGCGTGGCTGGGTGGAGACGCTGCGCGCCAAGTATGCCTTCTTCAAACACCCCACGGAGCGTGACATGGTCTACTACGAGGGCTCGCCCAACTTCTGCGAGCCCAACCAGGAGACGGGCTCGTTCGGCACCCGCGACCGTGCCTGCAACTTGTCCTCGCACGGCATCGAGGGCTGTGACCTGCTCTGCTGCGGCAGGGGCCACAACACCCGGACTGAGAAGCGAAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGTGTGCGTGTCTACGACGTACACACATGCAAGTGAGAGCCTGTGCGCTCgctcagacagacggacagaatGATGGACCATAGTGCCCAtcgcagacacacaaacacacacactgcagtccttgcatatatacagacagacagacagacaggcaccaaTGAGGAATGGCACTTTGTACTGGAACTCTATTCTTCTGCACCcttgtaataaaataaaaaaaacatatcctTCTTCCAAGCCctgcatcctcctcctctattTGAGTAGGTAGTTCCACGAACGGACATATGGGAGGGCCCATTTCCTTTGGAACAAGCTGTCAGTTTGACCTGTTCCCATTCCTGCACCATTGGGCCATGACCCCTTCTTTATTTATTTCCCCCACACACGGCTGTGCAGTAACCGATGACTTTCCAGACCGTTGCTATCGAATTGACATATTTTTAACTAACACCTGATTCCACCAGTCAATCACCTGGCTGGTCGACTATTGAGAACTAAACCAACTCTCCAACAGTACTAAACACACAGCAACAGCCCAGGAACCTACCATTTTAACTACTGAACCCACTGAGTGGCTGTTACTGGACCCTTCCCTCCTAAACTAAACTACTGAGCTGATGAAATCTCCTCTTTCCCAACCCCTGCACACTGTACTGATACTGAACTACAGCTGTCGCCTGGCTGGGATGCCTGATGCCTGGAAGATATGCTAGAGCCTGATTTTATAGCCCCACATTTCTGAAATATTAGCAATGGGCCAGGACTGGAGGTGGTATGCAGGAGGGGACATGTGCAGGAAACAAACACACTCGTTTCCACTAACGAACATTTCTGCACGTATGCACTATTCAGCTGAACAAGAACTGTCTAGAGGTAGTGAAACGTTGGCTATTGCTATTTATGAGAGAAAATGCATTCTTCTTGTCTTAACCAGTTACGTtctaacatacagtaacacaaCTGAGATTGTTCATCTCATTCAGATCAGAGACGTTTTGCTGTAATTTCCCCTTGAGTATGAAACAAGACAGATTTACAATATTTGAGGAAATTATAatgaattataaactgggtggtttgaagccctgaatactgattggctgaaagccatggtatatcagaccgtataccacgggttcgacgaaacatgtatttttactgctctaattatgttagtaaccagtttataatagcaataagtaacctctggggtttgtgctatatggccaatataccacggctaagggctgtgtccaggcactccgcgttgcgtcgtacATAAAaacagccattagccgtggtatattagccatatccCACACCCCTCGGGCCTCATTGCTTAAATGTCATATAGAACAAAACATTCACAACAAACAGGTAGGGTTCAGGTATGAGACTTTATTGGATTAATTCGTCATCAGTTTATTTTGCACTTGCAATAGGCCTAATGCTAATTAATTATTCTACTCATAGCAGTCATACTACGACAATGAGATCATTtatccaacacactgacagtCCATTTTATTATGTTCCTCATAATACTGTGAAGTCCTTGTCTAAGCTAAACCCTTCTCTCACCAGTGAAATGTGATGACAAGTGGAGaccagaggggagagagcagaaaGTGTCCTAATAGGCCTCTttcctcatctccttccctggATTGCCACTGATGTGAAATGTCTTGACAATAGAAGCAATATGGTGGAATCCTGTTCAGAGATTTGAAGTATCTGTGGGAAACAACTTAAGGAGACGAGGGTAGGGGGGGTTACTTAGTGTTTTGGGACACAGCCAATGTGAGTGAaggtgaatgtgtgtttgtgctgcTTCGAGTGAcgggtgttagggttagagggaTGGCAGGCAGGCATGCTGGCTTCACAACAGTGGAACAACCTGTGAGAGGTTTCCACACAACATGTTCTGACAGTCCTACGTGCTTCCTATTCATTATATTtaacaacaaaaatacaacttACCTAGGTAGTGTAGACTCCTCCCTTTGTGACATAGCTTAGTATCTGCGTCACCCTCCAAAAGGCTCTCCCTACACGGGCCCTTTCTGTGTTCAGTTCCTTCCTTTCCTCACCGCTACATCCAAAGTTTTGTACAAAGGTTTTAAAGTTAATAATTCCCTTTTTATTTTATAATctgaaaatgttatgtttttataAATATAATTTATTATACAATGTATATATCTGTATGACTGAACTAAGA
>TU1541303
gggtggtttgaagccctgaatactgattggctgaaagccatggtatatcagaccgtataccacgggttcgacgaaacatgtatttttactgctctaattatgttagtaaccagtttataatagcaataagtaacctctggggtttgtggtatattagccatatccCACACCCCTCGGGCCTCATTGCTTAAATGTCATATAGAACAAAACATTCACAACAAACAGGTAGGGTTCAGGTATGAGACTTTATTGGATTAATTCGTCATCAGTTTATTTTGCACTTGCAATAGGCCTAATGCTAATTAATTATTCTACTCATAGCAGTCATACTACGACAATGAGATCATTtatccaacacactgacagtCCATTTTATTATGTTCCTCATAATACTGTGAAGTCCTTGTCTAAGCTAAACCCTTCTCTCACCAGTGAAATGTGATGACAAGTGGAGaccagaggggagagagcagaaaGTGTCCTAATAGGCCTCTttcctcatctccttccctggATTGCCACTGATGTGAAATGTCTTGACAATAGAAGCAATATGGTGGAATCCTGTTCAGAGATTTGAAGTATCTGTGGGAAACAACTTAAGGAGACGAGGGTAGGGGGGGTTACTTAGTGTTTTGGGACACAGCCAATGTGAGTGAaggtgaatgtgtgtttgtgctgcTTCGAGTGAcgggtgttagggttagagggaTGGCAGGCAGGCATGCTGGCTTCACAACAGTGGAACAACCTGTGAGAGGTTTCCACACAACATGTTCTGACAGTCCTACGTGCTTCCTATTCATTATATTtaacaacaaaaatacaacttACCTAGGTAGTGTAGACTCCTCCCTTTGTGACATAGCTTAGTATCTGCGTCACCCTCCAAAAGGCTCTCCCTACACGGGCCCTTTCTGTGTTCAGTTCCTTCCTTTCCTCACCGCTACATCCAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564973.2 False 3595 mRNA 0.48 4 17994355 18024642
XM_021564974.2 False 3922 mRNA 0.47 4 18010027 18024642
TU1541303 True 957 lncRNA 0.43 2 18023486 18024524

Neighbor

gene id symbol gene type direction distance location
LOC110491481 LOC106579328 coding upstream 326156 17638981 ~ 17668199 (+)
LOC110491483 LOC106579330 coding upstream 390753 17596160 ~ 17623382 (+)
LOC110491484 sost coding upstream 496377 17490773 ~ 17497981 (+)
dusp3a LOC106579333 coding upstream 527887 17442743 ~ 17466468 (+)
LOC110491479 LOC106579387 coding upstream 578970 17412299 ~ 17415385 (+)
cdk5r1b LOC106579323 coding downstream 63840 18088482 ~ 18095827 (+)
tbkbp1 tbkbp1 coding downstream 227188 18251830 ~ 18323632 (+)
tbx21 tbx21 coding downstream 354882 18379524 ~ 18396021 (+)
pnpo LOC106589290 coding downstream 387598 18412240 ~ 18416746 (+)
cdk5rap3 cdk5rap3 coding downstream 399899 18424541 ~ 18429150 (+)
G1348227 NA non-coding upstream 12619 17973482 ~ 17981736 (+)
G1348179 NA non-coding upstream 86595 17907500 ~ 17907760 (+)
G1348178 NA non-coding upstream 87161 17906962 ~ 17907194 (+)
G1348168 NA non-coding upstream 92250 17901862 ~ 17902105 (+)
G1348146 NA non-coding upstream 108941 17885061 ~ 17885414 (+)
G1348258 NA non-coding downstream 17780 18042422 ~ 18042992 (+)
G1348264 LOC106579324 non-coding downstream 25537 18050179 ~ 18073463 (+)
G1348284 NA non-coding downstream 50292 18074934 ~ 18075496 (+)
G1348285 NA non-coding downstream 51390 18076032 ~ 18076460 (+)
G1348288 NA non-coding downstream 54111 18078753 ~ 18078987 (+)
LOC110492842 LOC106579341 other upstream 720375 17235828 ~ 17305959 (+)
LOC110491464 LOC106579031 other upstream 837685 17152137 ~ 17156699 (+)
G1346758 NA other upstream 1048111 16945928 ~ 16946244 (+)
G1345431 NA other upstream 2450818 15542391 ~ 15543537 (+)
G1348897 LOC106579309 other downstream 530535 18555177 ~ 18555452 (+)
LOC110491516 LOC106589273 other downstream 727981 18682058 ~ 18760420 (+)
LOC110491534 LOC105006846 other downstream 1114385 19138817 ~ 19141680 (+)
G1350066 NA other downstream 1712520 19737162 ~ 19738034 (+)
G1350275 NA other downstream 2006088 20030730 ~ 20037978 (+)

Expression


Co-expression Network