LOC110491479 (LOC106579387)


Basic Information

Item Value
gene id LOC110491479
gene name LOC106579387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17412299 ~ 17415385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564961.2
TGTGCGCGCTATTCCACTCCACTGGTTATTGCTCCACCAGTGCAGGGAGCAGACGGACAGATATGAGCGCGCAGAGATAAACTATATTTGGATGTATGAATATATGGATGTGGTCGCTGCGCTAGGATTATGCCATATTTGTACATTCAAGAGGTCTAGAAGGTCCACAGTCCTGCGGCCATCCAGTCTGCCACCTTCACCTTTGAAGAGGGTGCCAATGCCAACCTATTAGAACGGATTAACCAGAATTTGCCACCTCACATAAAGAGGTGAGAACATCCCATTGCCATGGGGAACCAGCTGACCGAGATAGCCCCCAACACCCCTTTCCTGCAAAACTTCCAGTCCTTACACGTTGTGGTGATTGGCCTGGATGCGGCTGGCAAAACTTCTCTGCTCTACAGACTGAAACTCAAGGAGTTTGTCAAGACCATCCCGACCAAGGGCTTTAACACGGAGAAGATCAAGGTAGCGGTGGGCAGCTCGCGGGCCATCACCTTCCAGGTCTGGGACGTAGGGGGCCAGGAGAAGCTACGGCCCCTCTGGAAGTCGTACACGAGGCGGACCGATGGCATGGTGTTCGTGGTGGACTCCACCGAGACCGAACGTATGGAGGAGGCCAAGGTGGAGCTTCACAAGATCACCCGTACCTCGGAGAACCAAGGGGTGCCCGTCGTGGTGCTGGCCAACAAGCAGGACCTGGCCTCGGCTCTGTCTGTGAATGAGGTTGAGAAGGCCCTGGCTGTCCATGAACTGAATGCCTCCACACTGCACCATGTACAGAGCTGCAGCGCCGTGGATGGACAGGGCTTACAACCAGGCCTAGAGAAACTCTACGAGATGATCCTGATGAGGAAGAAGATggtgaaacacaacaaacatagAAAGAGATAAGCCTTTGGTTGTCCTGAGTTACAGGGATATTTATGTACTGACTATGTAACTCTTTGAGCAGAAGTCCCGCCCCTTTAAATAAAAAGGAGGGCTTTTTGGCCAACAAAGATGGCCCAGGGGACAGGAGAAATGGATTTGGCCTTTATGTGACATGCAGTATTGATACACTGTGTCTTTCATACCTTGTATTCGCCACACAGCTGCCATTTGGATGCAAGAAATATGTAATAGCCGCAACAGGATGCCTATGACATATTTTATCACACAAAGTTGGACTCACTTGTTTGCACCACAACACATTAGGAATATGATACTGAACTTTGAACTCTGTACTCTGGATTTACATGACACATTTACATGATATGAAGCTAAATGGTATAGATATCAAATGGGACACCAAGGCTattacagtattattattattattattaattattttttattccaAGTGCATTGCACTGTTTTCAGAAGTTGTAAACTGTTTGTAACACTGAATAATTAATAAATCAGCACACTGTGTTAAATGTATGTTGATATCTATTGAGACAATATCATAGTGTAAAGCTAACACAGCATGCATTATAATGGGGCTTGGGACTAAATGCATTTAGCTGTATGTTGTTAAATTAAAGGATGGCAAAAGGAAgccatcttcaaatcaaattgtattcgtcacatgctttgtaaacaacagatgatgactaacagtgaaatgcttacttacaaggcagagagaaagaaaataaacaaataatagcAAAGTAATAATACGTGATAATGAAagtaataatagatacacaatgagtaacgataacttggttatctacaaggggtaccagtgccgagttgatgtgcaggggtagaaGGTATTTTAGGTAGATGTGCACAtataacagtagcagcagcgtatgtgatgagtcaaaaaaagttagtgcaaaaaggctCAATTCAcatagtccaggtagctatttggttaactatttaactacatacagtaccagtcaaaagtttggagaaaacctactcattcaatggtgtTTCTTTATTTGGACAATTTTatacagaataatagtgaagacatcaaacctatgaaataacacatatggaatcatgtattaaccaaaaacgTGTTGAACAAACAAGATATATTTTAGatattagattcttcaaagtagccacccattgccttgatgaccagcttcacctggaatgcttttccaacagtcttaaagga

Function

NR:

description
ADP-ribosylation factor-like protein 4D

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564961.2 True 2128 mRNA 0.43 2 17412299 17415385

Neighbor

gene id symbol gene type direction distance location
LOC110491478 LOC106579335 coding upstream 2443 17405145 ~ 17409856 (+)
LOC110491476 LOC106579336 coding upstream 9133 17346027 ~ 17403166 (+)
aarsd1 aarsd1 coding upstream 36243 17363326 ~ 17376056 (+)
LOC110492842 LOC106579341 coding upstream 109688 17235828 ~ 17305959 (+)
LOC110491469 arf1l coding upstream 200182 17162511 ~ 17212117 (+)
dusp3a LOC106579333 coding downstream 31653 17442743 ~ 17466468 (+)
LOC110491484 sost coding downstream 75388 17490773 ~ 17497981 (+)
LOC110491483 LOC106579330 coding downstream 180775 17596160 ~ 17623382 (+)
LOC110491481 LOC106579328 coding downstream 223596 17638981 ~ 17668199 (+)
LOC110491490 LOC106579325 coding downstream 578970 17994355 ~ 18024642 (+)
G1347476 NA non-coding upstream 31108 17380429 ~ 17381191 (+)
G1347471 NA non-coding upstream 54534 17356405 ~ 17357765 (+)
G1347339 NA non-coding upstream 183675 17226026 ~ 17228624 (+)
G1347655 NA non-coding downstream 54519 17469904 ~ 17470128 (+)
G1347847 NA non-coding downstream 202586 17617971 ~ 17618254 (+)
LOC110491464 LOC106579031 other upstream 255629 17152137 ~ 17156699 (+)
G1346758 NA other upstream 466055 16945928 ~ 16946244 (+)
G1345431 NA other upstream 1868762 15542391 ~ 15543537 (+)
G1345417 LOC106579048 other upstream 1887731 15524002 ~ 15524568 (+)
G1348897 LOC106579309 other downstream 1139792 18555177 ~ 18555452 (+)
LOC110491516 LOC106589273 other downstream 1337238 18682058 ~ 18760420 (+)
LOC110491534 LOC105006846 other downstream 1723642 19138817 ~ 19141680 (+)
G1350066 NA other downstream 2321777 19737162 ~ 19738034 (+)

Expression


Co-expression Network