G1348461 (LOC106582599)


Basic Information

Item Value
gene id G1348461
gene name LOC106582599
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18349204 ~ 18349486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1541554
cgtacaggtcatgctccaacagttgtCCAAGTACCCTGCACACCAAGGACatatgctcggcgcgtgtagcggagtatatcagaatgtcatcgatatacaccaccacaccctgccTGTGCAgatccctgaaaatcttgtctacaaaggattggaagactgatggagcattcatcaacccgtacggcatgacgaggtactcagaatgccctgaggtggtactaaacgccgtcttccactcatctccctcccggatactCACCAtgttgtacgcactcctgagatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1541554 True 283 lncRNA 0.51 1 18349204 18349486

Neighbor

gene id symbol gene type direction distance location
tbkbp1 tbkbp1 coding upstream 25572 18251830 ~ 18323632 (+)
cdk5r1b LOC106579323 coding upstream 253377 18088482 ~ 18095827 (+)
LOC110491490 LOC106579325 coding upstream 324562 17994355 ~ 18024642 (+)
LOC110491481 LOC106579328 coding upstream 681005 17638981 ~ 17668199 (+)
LOC110491483 LOC106579330 coding upstream 745602 17596160 ~ 17623382 (+)
tbx21 tbx21 coding downstream 30038 18379524 ~ 18396021 (+)
pnpo LOC106589290 coding downstream 62754 18412240 ~ 18416746 (+)
cdk5rap3 cdk5rap3 coding downstream 75055 18424541 ~ 18429150 (+)
nfe2l1b nfe2l1 coding downstream 90527 18440013 ~ 18447730 (+)
LOC110491501 snx11 coding downstream 105790 18455276 ~ 18477327 (+)
G1348381 LOC106579322 non-coding upstream 122593 18224754 ~ 18226611 (+)
G1348351 NA non-coding upstream 157613 18186381 ~ 18191591 (+)
G1348288 NA non-coding upstream 270217 18078753 ~ 18078987 (+)
G1348285 NA non-coding upstream 272744 18076032 ~ 18076460 (+)
G1348466 NA non-coding downstream 18097 18367583 ~ 18367787 (+)
G1348468 NA non-coding downstream 23147 18372633 ~ 18372961 (+)
G1348865 NA non-coding downstream 169359 18518845 ~ 18519056 (+)
G1348869 NA non-coding downstream 173022 18522508 ~ 18522810 (+)
G1348870 NA non-coding downstream 173420 18522906 ~ 18523194 (+)
LOC110492842 LOC106579341 other upstream 1075224 17235828 ~ 17305959 (+)
LOC110491464 LOC106579031 other upstream 1192534 17152137 ~ 17156699 (+)
G1346758 NA other upstream 1402960 16945928 ~ 16946244 (+)
G1345431 NA other upstream 2805667 15542391 ~ 15543537 (+)
G1348897 LOC106579309 other downstream 205691 18555177 ~ 18555452 (+)
LOC110491516 LOC106589273 other downstream 403137 18682058 ~ 18760420 (+)
LOC110491534 LOC105006846 other downstream 789541 19138817 ~ 19141680 (+)
G1350066 NA other downstream 1387676 19737162 ~ 19738034 (+)
G1350275 NA other downstream 1681244 20030730 ~ 20037978 (+)

Expression


Co-expression Network