tuba5 (LOC106572477)


Basic Information

Item Value
gene id tuba5
gene name LOC106572477
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46185921 ~ 46193971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945809.1
CAAGGCCAGAGCCTGGTTCAGTTCCAACCTGGCTACCTCCCAAAATCACAACAATATCTACATGTAGATGGAGTATGAACCAAATCACATATTTTAGGTTGCATGTAAATCCCTTTTTGAAACGTCATCATACCTACACCGTCACCACTGGGATCCAATGACAATTCGACTGGAGTGCTCAGGTATTTTAGTAGTGTGCAAGGCGGTGTGCTCAAAGTGCAGCGCAGACCCAGTCTACATTCCTGTGTTGGCGGTGACCATTGTCGACCGAGCTGTAGCAAAACTTTTCGCGCCTTTTACTGTATTCATTTTCTAACCCTTTTTTACGCGTCTTCAATCATCCGAATCTTGACAGGAGGAAATGAGAGAGTGTATCTCCATCCACGTGGGCCAGGCGGGAGTTCAGACTGGCAATGCATGCTGGGAACTCTTCTGCTTGGAACACGGTGTGGGGCCAGACGGGGTGCTCAATGAAGAGGACCAGGGGCCTAATTCACGGACTGACCCCTCCAACACCTTTTTTAACACAGGAAGTTCTGGCCGCCATGTTCCCAGGGCCATATTTGtggacctggagccaacagtGGTCAGCAGGAGTGCTAATTGGGAATGCATGCGGGGACCTGTGCTGGATGGAGCATGGTATCCAAGAGACAAGACCATTGGTGGTGGCGGTGATGACCCCTTTTACACTTTCTTCAATGAGCGTGGCTCAGGATAGCTTGTACAAAGGGCTGTATTTGTGGACCTAGCCAGCTGTAATTG
>XM_036945808.1
AATGACAATTCGACTGGAGTGCTCAGGTATTTTAGTAGTGTGCAAGGCGGTGTGCTCAAAGTGCAGCGCAGACCCAGTCTACATTCCTGTGTTGGCGGTGACCATTGTCGACCGAGCTGTAGCAAAACTTTTCGCGCCTTTTACTGTATTCATTTTCTAACCCTTTTTTACGCGTCTTCAATCATCCGAATCTTGACAGGAGGAAATGAGAGAGTGTATCTCCATCCACGTGGGCCAGGCGGGAGTTCAGACTGGCAATGCATGCTGGGAACTCTTCTGCTTGGAACACGGTGTGGGGCCAGACGGGGTGCTCAATGAAGAGGACCAGGGGCCTAATTCACGGACTGACCCCTCCAACACCTTTTTTAACACAGGAAGTTCTGGCCGCCATGTTCCCAGGGCCATATTTGtggacctggagccaacagtGGCAGGAGTGCTAATTGGGAATGCATGCGGGGACCTGTGCTGGATGGAGCATGGTATCCAAGAGACAAGACCATTGGTGGTGGCGGTGATGACCCCTTTTACACTTTCTTCAATGAGCGTGGCTCAGGATAGCTTGTACAAAGGGCTGTATTTGTGGACCTAGCCAGCTGTAATTG
>XM_036945810.1
GTATTTTAGTAGTGTGCAAGGCGGTGTGCTCAAAGTGCAGCGCAGACCCAGTCTACATTCCTGTGTTGGCGGTGACCATTGTCGACCGAGCTGTAGCAAAACTTTTCGCGCCTTTTACTGTATTCATTTTCTAACCCTTTTTTACGCGTCTTCAATCATCCGAATCTTGACAGGAGGAAATGAGAGAGTGTATCTCCATCCACGTGGGCCAGGCGGGAGTTCAGACTGGCAATGCATGCTGGGAACTCTTCTGCTTGGAACACGGTGTGGGGCCAGACGGGGTGCTCAATGAAGAGGACCAGGGGCCTAATTCACGGACTGACCCCTCCAACACCTTTTTTAACACAGGAAGTTCTGGCCGCCATGTTCCCAGGGCCATATTTGtggacctggagccaacagtGATGAGGTCAGGACGGGAATGTACAGGCAGCTCTACCATCCTGAGCAGCTCATCTCTGGAAAGGAGGATGCAGCCAATAACTACGCCCGTGGACACTACACCGTGGGTAAGGAGATCATTGACGGGGTTCTGGAGCGTGTCCGTAAAATGACTGACCAGTGCACAGGGCTACAAGGATTCCTCATCTTCCACAGCTTCGGAGGAGGCACTGGCTCTGGTTTCACCTCTCTGCTGATGGAGCGCCTGTCTGTTGACTACGGTTGGGATCAACTATCAGCCCCCGACTGCCGTACCTGGAGGTGATCTAGCTAAAGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCCATTGCTGAAGCCTGGGCCCGTTTGGACCACAAGTTTGACCTCATGTATGCCAAACGTGCCTTTGTGCACTGGTATGTAGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCTTGCCTGGAGATGGATTATGAAGAGCTGGGCAGAACAAGCACAGAATCTGATGATGATGAAGCGGGTGAGGAATATTAATAACCAAATAACCATGATGTCCAATCTGTCTATTAAAAATGTAATATTCTGTCTTTGTATTCTTTCTTATAACAATATATTGTTGTATCTGCCTGCCCTGAACAAAAACATCTGAAGTTGTATAAACAGCCAGATGCACTTTTTTTGTGGTTTATTAACACCTTGTTAATCGGTATGTTTCAAAGTGCCATGTTTTGCAATTGCAATAGTTTTCAGCTTCTGAATAAAATCGGTCTTGAGTACAACattgcaaaatatattttttgtttggcCCTAGCATGTTACAGCTAGGGCCAAACTCAACCAGGAGTAGAGTACCTTACCCACGTTCTGTTGTCATGTTCTGTTTCAGTAATTATATATTGAGGATTTATATTTAGGTTACTAACAGTATATTATGAGTCTATAGATGTATAAATATTTTATAATTATGTAATAACCAGTTGTAACCCATTGCTGGTTGCATTCAGTGAGCTGATTACTGTTGCTACTGGGCTATGGTCTCTGGATCATTATTGTGGAGCGCGTCGATGTAATTTGCGACTAGCCTCAAACTGTGTTACATATTAAAACTCATCAATGCTCGCCCCCTGCAAAGCAGATACATCCAATCAAAATACTCCCATCGGGGCTATTTAAAGAACAAGATCCGGCAGCGGTGAAGGTGTCACCTGAAAATATCCCTCCGCAATAATAAACAGTAGCCAGTGAGGATACAATGAAAAGCATTTTCAAGAATGAATTCTCTGAAATCAAATTTTACCAATCAAAATGGTGCACAATTACGGATATTCAACTTGTCAATAAGACGATGTTTTGTTAGACGAACAGTATTTGACACTATAATGAAGATGCTGGTTTGGATGTAGCATAGGCTTCAAATGCACTGTGTGCTACAGTACTTCACGGAGCACATCAGTCGGGTGCATTCAATCTTGTGACTTAATAATAGGCCTCTACATAGCCTATATATGTTTCATTACAATTtagtttttaaaaaattattaGAGTCTGACTAAAGAAAATAGTAATTTATGCGTAGTTAATACTCAATTTTTTCCAACATAATTCTGTGTAAATTACACTAAATTCAACACGACAATGGTGTGTCAAAACAAACGGGTATTTGTATATTTACATattcatgtatgtatgtatgtatgtatgtatgtgattAACAGTTGAAATATTTAGAAATATATTGGTGAAATCGACAATAATCACAATCCATG
>TU1575920
CATTCCTGTGTTGGCGGTGACCATTGTCGACCGAGCTGTAGCAAAACTTTTCGCGCCTTTTACTGTATTCATTTTCTAACCCTTTTTTACGCGTCTTCAATCATCCGAATCTTGACAGGAGGAAATGGTTGGGATCAACTATCAGCCCCCGACTGCCGTACCTGGAGGTGATCTAGCTAAAGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCCATTGCTGAAGCCTGGGCCCGTTTGGACCACAAGTTTGACCTCATGTATGCCAAACGTGCCTTTGTGCACTGGTATGTAGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCTTGCCTGGAGATGGATTATGAAGAGCTGGGCAGAACAAGCACAGAATCTGATGATGATGAAGCGGGTGA
>TU1575919
TGGGAACTCTTCTGCTTGGAACACGGTGTGGGGCCAGACGGGGTGCTCAATGAAGAGGACCAGGGGCCTAATTCACGGACTGACCCCTCCAACACCTTTTTTAACACAGGAAGTTCTGGCCGCCATGTTCCCAGGGCCATATTTGtggacctggagccaacagtGATGAGGTCAGGACGGGAATGTACAGGCAGCTCTACCATCCTGAGCAGCTCATCTCTGGAAAGGAGGATGCAGCCAATAACTACGCCCGTGGACACTACACCGTGGGTAAGGAGATCATTGACGGGGTTCTGGAGCGTGTCCGTAAAATGACTGACCAGTGCACAGGGCTACAAGGATTCCTCATCTTCCACAGCTTCGGAGGAGGCACTGGCTCTGGTTTCACCTCTCTGCTGATGGAGCGCCTGTCTGTTGACTACGGTTGGGATCAACTATCAGCCCCCGACTGCCGTACCTGGAGGTGATCTAGCTAAAGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCCATTGCTGAAGCCTGGGCCCGTTTGGACCACAAGTTTGACCTCATGTATGCCAAACGTGCCTTTGTGCACTGGTATGTAGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCTTGCCTGGAGATGGATTATGAAGAGCTGGGCAGAACAAGCACAGAATCTGATGATGATGAAGCGGGTGA

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945809.1 False 765 mRNA 0.50 3 46185921 46189197
XM_036945808.1 False 605 mRNA 0.51 3 46186077 46189197
XM_036945810.1 False 2194 mRNA 0.42 5 46186103 46193971
TU1575920 False 417 TUCP 0.51 2 46186158 46192729
TU1575919 True 713 TUCP 0.54 4 46188747 46192729

Neighbor

gene id symbol gene type direction distance location
LOC110492135 LOC106567202 coding upstream 531 46168483 ~ 46185390 (+)
cebpb LOC100136165 coding upstream 47270 46137034 ~ 46138651 (+)
LOC118939543 NA coding upstream 83910 46095078 ~ 46102011 (+)
LOC110491071 NA coding upstream 184532 46000033 ~ 46001389 (+)
LOC110492122 LOC106567192 coding upstream 243368 45932660 ~ 45942553 (+)
kdm5bb LOC106567205 coding downstream 131 46194102 ~ 46230145 (+)
LOC110492736 LOC106567342 coding downstream 37662 46231633 ~ 46242266 (+)
LOC110492737 LOC106567206 coding downstream 49945 46243916 ~ 46256237 (+)
zgc:198371 LOC106567208 coding downstream 66314 46260285 ~ 46266312 (+)
LOC110492739 LOC106572469 coding downstream 73838 46267809 ~ 46278481 (+)
G1379579 NA non-coding upstream 39435 46146259 ~ 46146486 (+)
G1379578 LOC100194703 non-coding upstream 41929 46143771 ~ 46143992 (+)
G1379577 NA non-coding upstream 42590 46142885 ~ 46143331 (+)
G1379501 NA non-coding upstream 45941 46139723 ~ 46139980 (+)
G1379557 LOC105022328 non-coding upstream 65332 46114915 ~ 46120589 (+)
G1379618 NA non-coding downstream 49358 46243329 ~ 46243595 (+)
G1379630 NA non-coding downstream 82267 46276238 ~ 46276499 (+)
G1379631 LOC106567210 non-coding downstream 89276 46283247 ~ 46283990 (+)
G1379272 NA other upstream 478472 45705739 ~ 45707449 (+)
G1377698 NA other upstream 2004746 44144188 ~ 44181175 (+)
ubxn10 ubxn10 other upstream 2444415 43740654 ~ 43742224 (+)
G1376652 NA other upstream 3092161 43093501 ~ 43093760 (+)
pfd4 pfd4 other upstream 3173983 43009496 ~ 43011939 (+)
G1379941 NA other downstream 626524 46820495 ~ 46865266 (+)
G1379959 LOC106567238 other downstream 751286 46945257 ~ 46948217 (+)
LOC110491080 LOC106572377 other downstream 832151 47026122 ~ 47029192 (+)
LOC110492164 mitf other downstream 2088239 48282132 ~ 48331926 (+)
LOC110492179 NA other downstream 2830960 49024001 ~ 49034167 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G243253 NA non-coding CI01000056 null 1926033 ~ 1926510 (-)