G1346743


Basic Information

Item Value
gene id G1346743
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17065690 ~ 17098008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1539623
GGTGGGTGGGCGGTTGGAAGGGAGATGGGGGGAAGTCTAttggggtgggtggggggttgCGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCTTGTATGTTGTCCATTTTAAAATCTGTTCTTTTTCTTAATACATTgtacaaatatttttttcttaacgtAAGCAACTatataaaaacttcattttttttcttcactgaAAACCTGGATTCCACCCCATGTACTGTGTAGATTTCACGAACAGAGGTATGCACAACTTCATTTCAACAAATGCGTCTATAAGCCATTTTACAAAAGAAGAAAATAAACTTGAAACACCAAGGGACAGTGGGTACCGTGTCTTCAGTCGTTTGGGGAAGTGTCTAAAGCCCTTCTTTTTTATTGCACAGTCCCATCTCTACCGGACTGTAGATTTGTGTACAGATTTTCCGTGCCAAATTTTGTGATAATTTTCTCTCCTGCCTCTAATCACGCTGTAGGGGTTTCAGTTTGTGTTCGTTTATTTTCTTTGTCTTTCTTTTTTCATACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAAATTGTCAAATATACAAATTTAAATTTCAACTGAATAAAAGACAGACATTATACTGTATAAACCCACATGGGCCAAATTATGTATATTATTAGGAGGTTCataaaaaactatgaaataactacaaaaaaaaatacacaaactGCCACTTTTAAGTACACTACTACACATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAgaggctgtaaaaaaaaaaaaaaaagctacaaGAGAATCATCCACTCGGTACCATTGTAGTTGACATGACGCGACTGTAACCTGTCGATTTCTTCTCTGGTTTAATAAGATGCTAATGATGAAAAGTTTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTATTTTATgctcttttttcttttctttttgttCTTCTGTTATTTTAAATGGTTCCAAAACCACGTTTTTGTAATGAATCAATGTTTATGCTGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGACTTAGTATGTGCA
>TU1539620
gCGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCTTGTATGTTGTCCATTTTAAAATCTGTTCTTTTTCTTAATACATTgtacaaatatttttttcttaacgtAAGCAACTatataaaaacttcattttttttcttcactgaAAACCTGGATTCCACCCCATGTACTGTGTAGATTTCACGAACAGAGGTATGCACAACTTCATTTCAACAAATGCGTCTATAAGCCATTTTACAAAAGAAGAAAATAAACTTGAAACACCAAGGGACAGTGGGTACCGTGTCTTCAGTCGTTTGGGGAAGTGTCTAAAGCCCTTCTTTTTTATTGCACAGTCCCATCTCTACCGGACTGTAGATTTGTGTACAGATTTTCCGTGCCAAATTTTGTGATAATTTTCTCTCCTGCCTCTAATCACGCTGTAGGGGTTTCAGTTTGTGTTCGTTTATTTTCTTTGTCTTTCTTTTTTCATACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAAATTGTCAAATATACAAATTTAAATTTCAACTGAATAAAAGACAGACATTATACTGTATAAACCCACATGGGCCAAATTATGTATATTATTAGGAGGTTCataaaaaactatgaaataactacaaaaaaaaatacacaaactGCCACTTTTAAGTACACTACTACACATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAgaggctgtaaaaaaaaaaaaaaaagctacaaGAGAATCATCCACTCGGTACCATTGTAGTTGACATGACGCGACTGTAACCTGTCGATTTCTTCTCTGGTTTAATAAGATGCTAATGATGAAAAGTTTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTATTTTATgctcttttttcttttctttttgttCTTCTGTTATTTTAAATGGTTCCAAAACCACGTTTTTGTAATGAATCAATGTTTATGCTGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGACTTAGTATGTGCA
>TU1539621
gCGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCTTGTATGTTGTCCATTTTAAAATCTGTTCTTTTTCTTAATACATTgtacaaatatttttttcttaacgtAAGCAACTatataaaaacttcattttttttcttcactgaAAACCTGGATTCCACCCCATGTACTGTGTAGATTTCACGAACAGAGGTATGCACAACTTCATTTCAACAAATGCGTCTATAAGCCATTTTACAAAAGAAGAAAATAAACTTGAAACACCAAGGGACAGTGGGTACCGTGTCTTCAGTCGTTTGGGGAAGTGTCTAAAGCCCTTCTTTTTTATTGCACAGTCCCATCTCTACCGGACTGTAGATTTGTGTACAGATTTTCCGTGCCAAATTTTGTGATAATTTTCTCTCCTGCCTCTAATCACGCTGTAGGGGTTTCAGTTTGTGTTCGTTTATTTTCTTTGTCTTTCTTTTTTCATACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAAATTGTCAAATATACAAATTTAAATTTCAACTGAATAAAAGACAGACATTATACTGTATAAACCCACATGGGCCAAATTATGTATATTATTAGGAGGTTCataaaaaactatgaaataactacaaaaaaaaatacacaaactGCCACTTTTAAGTACACTACTACACATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAgaggctgtaaaaaaaaaaaaaaaagctacaaGAGAATCATCCACTCGGTACCATTGTAGTTGACATGACGCGACTGTAACCTGTCGATTTCTTCTCTGGTTTAATAAGATGCTAATGATGAAAAGTTTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTATTTTATgctcttttttcttttctttttgttCTTCTGTTATTTTAAATGGTTCCAAAACCACGTTTTTGTAATGAATCAATGTTTATGCTGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGACTTAGTATGTGCAGATCAATCTGTTGTCTTAACTTTTGTGATGGAATATGTGAGGGCAGCAACTCAATGAGAGATTTCACTAGTGTGAAAGGTTCCAAAAGCCGGTTTCCCTGACACAGAT
>TU1539625
gCGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCTTGTATGTTGTCCATTTTAAAATCTGTTCTTTTTCTTAATACATTgtacaaatatttttttcttaacgtAAGCAACTatataaaaactttttttttcttcactgaaaacCTGGATTCCACCCCATGTACTGTGTAGATTTCACGAACAGAGGTATGCACAACTTCATTTCAACAAATGCGTCTATAAGCCATTTTACAAAAGAAGAAAATAAACTTGAAACACCAAGGGACAGTGGGTACCGTGTCTTCAGTCGTTTGGGGAAGTGTCTAAAGCCCTTCTTTTTTATTGCACAGTCCCATCTCTACCGGACTGTAGATTTGTGTACAGATTTTCCGTGCCAAATTTTGTGATAATTTTCTCTCCTGCCTCTAATCACGCTGTAGGGGTTTCAGTTTGTGTTCGTTTATTTTCTTTGTCTTTCTTTTTTCATACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAAATTGTCAAATATACAAATTTAAATTTCAACTGAATAAAAGACAGACATTATACTGTATAAACCCACATGGGCCAAATTATGTATATTATTAGGAGGTTCataaaaaactatgaaataactacaaaaaaaaatacacaaactGCCACTTTTAAGTACACTACTACACATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAgaggctgtaaaaaaaaaaaaaaaagctacaaGAGAATCATCCACTCGGTACCATTGTAGTTGACATGACGCGACTGTAACCTGTCGATTTCTTCTCTGGTTTAATAAGATGCTAATGATGAAAAGTTTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTATTTTATgctcttttttcttttctttttgttCTTCTGTTATTTTAAATGGTTCCAAAACCACGTTTTTGTAATGAATCAATGTTTATGCTGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGACTTAGTATGTGCA
>TU1539627
gCGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCTTGTATGTTGTCCATTTTAAAATCTGTTCTTTTTCTTAATACATTgtacaaatatttttttcttaacgtAAGCAACTatataaaaactttttttttttttcttcactgaAAACCTGGATTCCACCCCATGTACTGTGTAGATTTCACGAACAGAGGTATGCACAACTTCATTTCAACAAATGCGTCTATAAGCCATTTTACAAAAGAAGAAAATAAACTTGAAACACCAAGGGACAGTGGGTACCGTGTCTTCAGTCGTTTGGGGAAGTGTCTAAAGCCCTTCTTTTTTATTGCACAGTCCCATCTCTACCGGACTGTAGATTTGTGTACAGATTTTCCGTGCCAAATTTTGTGATAATTTTCTCTCCTGCCTCTAATCACGCTGTAGGGGTTTCAGTTTGTGTTCGTTTATTTTCTTTGTCTTTCTTTTTTCATACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAAATTGTCAAATATACAAATTTAAATTTCAACTGAATAAAAGACAGACATTATACTGTATAAACCCACATGGGCCAAATTATGTATATTATTAGGAGGTTCataaaaaactatgaaataactacaaaaaaaaatacacaaactGCCACTTTTAAGTACACTACTACACATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAgaggctgtaaaaaaaaaaaaaaaagctacaaGAGAATCATCCACTCGGTACCATTGTAGTTGACATGACGCGACTGTAACCTGTCGATTTCTTCTCTGGTTTAATAAGATGCTAATGATGAAAAGTTTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTATTTTATgctcttttttcttttctttttgttCTTttttgttatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1539623 False 1153 lncRNA 0.35 2 17065690 17066885
TU1539620 False 1095 lncRNA 0.33 2 17065748 17066885
TU1539621 False 1203 lncRNA 0.34 2 17065748 17066993
TU1539625 False 1092 lncRNA 0.33 2 17065748 17066885
TU1539627 True 997 lncRNA 0.33 3 17065748 17098008

Neighbor

gene id symbol gene type direction distance location
LOC110491462 LOC106579026 coding upstream 172 16953436 ~ 17065518 (+)
LOC110491461 vti1a coding upstream 140808 16733423 ~ 16924882 (+)
LOC110491460 NA coding upstream 337103 16725000 ~ 16728587 (+)
sox8a sox8 coding upstream 378262 16684194 ~ 16687428 (+)
LOC118939513 NA coding upstream 619084 16435637 ~ 16446606 (+)
crygmxl2 LOC106589324 coding downstream 51370 17149378 ~ 17151329 (+)
LOC110491464 LOC106579031 coding downstream 54129 17152137 ~ 17156699 (+)
LOC110491467 NA coding downstream 88881 17186889 ~ 17197923 (+)
LOC110491468 LOC106579033 coding downstream 101849 17199857 ~ 17206714 (+)
LOC110491469 arf1l coding downstream 109030 17162511 ~ 17212117 (+)
G1346763 NA non-coding upstream 113254 16952235 ~ 16952436 (+)
G1346762 NA non-coding upstream 115383 16950074 ~ 16950307 (+)
G1346761 NA non-coding upstream 116589 16948896 ~ 16949101 (+)
G1346725 NA non-coding upstream 170068 16879968 ~ 16895622 (+)
G1346713 NA non-coding upstream 177362 16864085 ~ 16888328 (+)
G1347308 NA non-coding downstream 60317 17158325 ~ 17159636 (+)
G1347310 NA non-coding downstream 62433 17160441 ~ 17160739 (+)
G1347311 NA non-coding downstream 63190 17161198 ~ 17161438 (+)
G1347312 NA non-coding downstream 63546 17161554 ~ 17161900 (+)
G1346758 NA other upstream 119446 16945928 ~ 16946244 (+)
G1345431 NA other upstream 1522153 15542391 ~ 15543537 (+)
G1345417 LOC106579048 other upstream 1541122 15524002 ~ 15524568 (+)
G1345170 NA other upstream 1582177 15483147 ~ 15483513 (+)
G1345084 LOC106578999 other upstream 1698234 15280053 ~ 15367456 (+)
LOC110492842 LOC106579341 other downstream 138275 17235828 ~ 17305959 (+)
LOC110491483 LOC106579330 other downstream 498711 17596160 ~ 17623382 (+)
G1348897 LOC106579309 other downstream 1457169 18555177 ~ 18555452 (+)
LOC110491516 LOC106589273 other downstream 1654615 18682058 ~ 18760420 (+)

Expression


Co-expression Network