XLOC_032664 (gpd2)


Basic Information

Item Value
gene id XLOC_032664
gene name gpd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 12379666 ~ 12459449 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063611
GAATTTTCCTTTTagacaccatcatcatcaccgtCACCAAAAGCAGGATCCATGGCTTTCAGAAAGGCATTGAAGGGAACTCTAATAGGGGGCGGAGCTGTAGCTACAGCCGTCGGCCTATCACAGTTCTTTGAATACAGGAAGAATCAGGCTCGGTTGGCATATGTCGAGGCACAGGGTGAGCTAAAGGTGCCGTTTAAAGATGCTCTCCCTACAAGAGAGGAACAGCTTTCAACACTGCGAAACACAGAGGAGTTTGATGTCCTGGTTGTTGGCGGCGGAGCCACGGGCTCAGGATGTGCCTTAGATGCTGTCACACGGAATCTGAAGACCGCCCTAGTAGAACGCAGTGATTTTTCATCGGGCACCAGCAGCAGGAGCACCAAGCTCATTCACGGAGGAGTCCGCTATCTGCAGAAAGCCATCATGAAACTAGATTATGAGCAGTACATGATGGTGAAAGAAGCCCTTCATGAACGTGCCAATCTGCTGGAAATCGCCCCTCACCTATCTGCACCATTACCCATAATGCTTCCTGTTTACAAGTGGTGGCAGTTGCCGTATTACTGGGCTGGCATTAAAATGTATGACCTGGTTGCCGGATCTCAATGTCTGAAGAGCAGTTACGTTTTGAGCAAGAGCAAAGCCCTGGAGTTCTTCCCAATGCTGAAGAAAGACAAACTGGTGGGAGCCATCGTCTACTATGACGGGCAGCACAATGATGCCCGCATGAACCTGGCCATCGCTCTTACAGCTGCTCGACATGGTGCTGCTATTGCTAACTATACAGAAGTGGTTCATCTGCTAAAGAAACCAGACCCCAAGACAGGCCAGGAGAAAGTATGTGGAGCCCGATGCCGAGATGTGGTCACAGGGCAGGAGTTCGACATTCGTGCCAAATGTGTCATCAACGCCACCGGTCCCTTCACTGACTCACTCCGCAAAATGGACAACCAGAAAACTGCCAACATCTGCCAGCCTAGTGCAGGAGTACACATAGTCATCCCTGGATACTACAGTCCAGACAACATGGGGCTCTTAGACCCTGCCACCAGTGATGGCCGTGTCATTTTCTTCTTGCCCTGGGAGAAGATGACTATCGCTGGCACCACAGACACTCCTACTGAAGTCACAGCTCATCCCATCCCAATGGAGGATGACATCAACTTCATCCTGAGTGAAGTCCGCAACTACCTCAGCCCCGATGTAGAAGTGCGGCGAGGGGATGTCCTGGCGGCCTGGAGTGGTATTCGTCCGCTGGTCACCGACCCCAGCTCCAAAGACACGCAGTCCATCTGTCGAAACCACATCGTCAACGTCAGCGACAGCGGGCTCATCACAATTGCTGGTGGGAAGTGGACAACCTATCGTTCGATGGCTGAGGAGACACTTGATGCGGCCATAAAGGCTCATAACCTCTCAGCCGGACCCAGCAGGACGGTCGGTCTGACGCTGGAGGGCGGGAAGGACTGGACTCCCACCCTGTATATACGCTTGGTTCAAGACTACGGGCTTGAAAACGAGGTTGCCCAGCACCTGGCAGCCACCTATGGAGGAAGATCGTTTGAAGTGGCCAAGATGGCACAGGTGACGGGCAAGAGATGGCCAATAGTGGGGAAACGCCTTGTTTCTGTTGTTTTGATTTTTCAGCTGGGCTGGTAAGCATAAATAGaatttttctttaatgtttttttatccaCTGAGCTTTCTGTTGTGCCATTTTATTCAAGTAAATGATTTGCTACTGAACACATTGTGGTGAGGTTGCTCAAGGGCTGCTGGTGTCTTCTGAGGTAAATAATGCACTATATGTAAATTTATTTGCAGTTTTATACTATACACTGCTTATTCATCACTATGCTGAACTACAGTGATGATTACTTTTACGTATTTCAAACTCTCCtgatgtttatgtatttattcaaaaTCTATCATTTCTGTTATACTACTGTATATGTTTTCTTTAATTAATGAATGTTGATTATTTAAGGGATATTGTACATCTAGGTGGTCCATCAACTGCCTTGATGTACATTATTACACTTATTACACGGCTTCTAGTCATCACACTCGAAAGATTGATCTGGGCTGTAGTAATTTACtaactttttaattaaatgtaatgctTGC
>TCONS_00063612
GAATTTTCCTTTTagacaccatcatcatcaccgtCACCAAAAGCAGGATCCATGGCTTTCAGAAAGGCATTGAAGGGAACTCTAATAGGGGGCGGAGCTGTAGCTACAGCCGTCGGCCTATCACAGTTCTTTGAATACAGGAAGAATCAGGCTCGGTTGGCATATGTCGAGGCACAGGGTGAGCTAAAGGTGCCGTTTAAAGATGCTCTCCCTACAAGAGAGGAACAGCTTTCAACACTGCGAAACACAGAGGAGTTTGATGTCCTGGTTGTTGGCGGCGGAGCCACGGGCTCAGGATGTGCCTTAGATGCTGTCACACGGAATCTGAAGACCGCCCTAGTAGAACGCAGTGATTTTTCATCGGGCACCAGCAGCAGGAGCACCAAGCTCATTCACGGAGGAGTCCGCTATCTGCAGAAAGCCATCATGAAACTAGATTATGAGCAGTACATGATGGTGAAAGAAGCCCTTCATGAACGTGCCAATCTGCTGGAAATCGCCCCTCACCTATCTGCACCATTACCCATAATGCTTCCTGTTTACAAGTGGTGGCAGTTGCCGTATTACTGGGCTGGCATTAAAATGTATGACCTGGTTGCCGGATCTCAATGTCTGAAGAGCAGTTACGTTTTGAGCAAGAGCAAAGCCCTGGAGTTCTTCCCAATGCTGAAGAAAGACAAACTGGTGGGAGCCATCGTCTACTATGACGGGCAGCACAATGATGCCCGCATGAACCTGGCCATCGCTCTTACAGCTGCTCGACATGGTGCTGCTATTGCTAACTATACAGAAGTGGTTCATCTGCTAAAGAAACCAGACCCCAAGACAGGCCAGGAGAAAGTATGTGGAGCCCGATGCCGAGATGTGGTCACAGGGCAGGAGTTCGACATTCGTGCCAAATGTGTCATCAACGCCACCGGTCCCTTCACTGACTCACTCCGCAAAATGGACAACCAGAAAACTGCCAACATCTGCCAGCCTAGTGCAGGAGTACACATAGTCATCCCTGGATACTACAGTCCAGACAACATGGGGCTCTTAGACCCTGCCACCAGTGATGGCCGTGTCATTTTCTTCTTGCCCTGGGAGAAGATGACTATCGCTGGCACCACAGACACTCCTACTGAAGTCACAGCTCATCCCATCCCAATGGAGGATGACATCAACTTCATCCTGAGTGAAGTCCGCAACTACCTCAGCCCCGATGTAGAAGTGCGGCGAGGGGATGTCCTGGCGGCCTGGAGTGGTATTCGTCCGCTGGTCACCGACCCCAGCTCCAAAGACACGCAGTCCATCTGTCGAAACCACATCGTCAACGTCAGCGACAGCGGGCTCATCACAATTGCTGGTGGGAAGTGGACAACCTATCGTTCGATGGCTGAGGAGACACTTGATGCGGCCATAAAGGCTCATAACCTCTCAGCCGGACCCAGCAGGACGGTCGGTCTGACGCTGGAGGGCGGGAAGGACTGGACTCCCACCCTGTATATACGCTTGGTTCAAGACTACGGGCTTGAAAACGAGGTTGCCCAGCACCTGGCAGCCACCTATGGAGGAAGATCGTTTGAAGTGGCCAAGATGGCACAGGTGACGGGCAAGAGATGGCCAATAGTGGGGAAACGCCTTGTTTCTGAATTTCCCTACATTGAGAGTGAGGTGCAGTATGCTATAAAGGAGTATGCGTGTACAGCCATCGATGTGATTTCTCGCAGAACAAGGTTGGGCTTTCTAAACGTGCAGGCTGCGGATGAGGCTCTGCCACGCATTGTTGAGATCATGGGCAAAGAACTGCAGTGGACTGAGCAGAAGAAGAAAGAAGAGCTGGAAGCAGCGAAGAACTTCCTGTATCTGGAGATGGGTTATAAAGCTCGCTCTGAACAGCTCAGCAAGACCACCGAGATCTCACTCACTCCTCAAGAGGTGGCCAGGTATAAGAAACGCTTTTATAAATTTGACAAGGAGAGCAAAGGCTTTATCACAACAGTGGATGTCCAGCAAGTGCTAGAGAGACTCAGTATTCACATTGACGAAAATGCTCTTCACGAGATCCTCAATGAAGTGGACCTCAACAAAAACGGACAGGTGGAACTGGATGAGTTCCTGCAGCTCATGAGCGCGGTTCAGAGAGGTCAGATCTCCGACAGTCGTCTGGCCATCCTATTGAAGACGGCCGAGGAAGGCCTGGATCTGAGAGGTCCCGTCTCTGTCGACCGCAGCGGAGGAGGCGTCTGAATCGCGACGGCAAACCCAAACATCTACCAGACAGAGGCTCCTACCGCAAACTTGGATAAACACCAAAAAATGCTGACCACTGTGCCCACGCCGGTCAGATCACAAGCACATCCTCTTCAGTCATTAATCGACCGGCTGGCTGCCTTCGACTACAATCACTTTCTGAAAGAAAAGAATTTGTTTTAGCATGGTTATTATTGAAAAAGTTATTATTAGTGCAGAATATATTTGAaagagtatatattttttattgaatgcaTGCAGTGCCATGTTGTGTGACCTCcatgttgggaaaaaaaacaatggaaaccatCATAGAATATAGTTTGACTTTATTAGGCATTGTATTGAATTTTAATGGCCTTTTGTGTCCCTATTAGCATTTTTTGCTTTCTGTTTATCTTTTTTGCTCTCTAttaatctattttaaaataaa
>TCONS_00063613
ATGGCTTTCAGAAAGGCATTGAAGGGAACTCTAATAGGGGGCGGAGCTGTAGCTACAGCCGTCGGCCTATCACAGTTCTTTGAATACAGGAAGAATCAGGCTCGGTTGGCATATGTCGAGGCACAGGGTGAGCTAAAGGTGCCGTTTAAAGATGCTCTCCCTACAAGAGAGGAACAGCTTTCAACACTGCGAAACACAGAGGAGTTTGATGTCCTGGTTGTTGGCGGCGGAGCCACGGGCTCAGGATGTGCCTTAGATGCTGTCACACGGAATCTGAAGACCGCCCTAGTAGAACGCAGTGATTTTTCATCGGGCACCAGCAGCAGGAGCACCAAGCTCATTCACGGAGGAGTCCGCTATCTGCAGAAAGCCATCATGAAACTAGATTATGAGCAGTACATGATGGTGAAAGAAGCCCTTCATGAACGTGCCAATCTGCTGGAAATCGCCCCTCACCTATCTGCACCATTACCCATAATGCTTCCTGTTTACAAGTGGTGGCAGTTGCCGTATTACTGGGCTGGCATTAAAATGTATGACCTGGTTGCCGGATCTCAATGTCTGAAGAGCAGTTACGTTTTGAGCAAGAGCAAAGCCCTGGAGTTCTTCCCAATGCTGAAGAAAGACAAACTGGTGGGAGCCATCGTCTACTATGACGGGCAGCACAATGATGCCCGCATGAACCTGGCCATCGCTCTTACAGCTGCTCGACATGGTGCTGCTATTGCTAACTATACAGAAGTGGTTCATCTGCTAAAGAAACCAGACCCCAAGACAGGCCAGGAGAAAGTATGTGGAGCCCGATGCCGAGATGTGGTCACAGGGCAGGAGTTCGACATTCGTGCCAAATGTGTCATCAACGCCACCGGTCCCTTCACTGACTCACTCCGCAAAATGGACAACCAGAAAACTGCCAACATCTGCCAGCCTAGTGCAGGAGTACACATAGTCATCCCTGGATACTACAGTCCAGACAACATGGGGCTCTTAGACCCTGCCACCAGTGATGGCCGTGTCATTTTCTTCTTGCCCTGGGAGAAGATGACTATCGCTGGCACCACAGACACTCCTACTGAAGTCACAGCTCATCCCATCCCAATGGAGGATGACATCAACTTCATCCTGAGTGAAGTCCGCAACTACCTCAGCCCCGATGTAGAAGTGCGGCGAGGGGATGTCCTGGCGGCCTGGAGTGGTATTCGTCCGCTGGTCACCGACCCCAGCTCCAAAGACACGCAGTCCATCTGTCGAAACCACATCGTCAACGTCAGCGACAGCGGGCTCATCACAATTGCTGGTGGGAAGTGGACAACCTATCGTTCGATGGCTGAGGAGACACTTGATGCGGCCATAAAGGCTCATAACCTCTCAGCCGGACCCAGCAGGACGGTCGGTCTGACGCTGGAGGGCGGGAAGGACTGGACTCCCACCCTGTATATACGCTTGGTTCAAGACTACGGGCTTGAAAACGAGGTTGCCCAGCACCTGGCAGCCACCTATGGAGGAAGATCGTTTGAAGTGGCCAAGATGGCACAGGTGACGGGCAAGAGATGGCCAATAGTGGGGAAACGCCTTGTTTCTGTGATAGTGTTACTCCAGCTTTTGCGC
>TCONS_00063615
ATTGTAACATCACACAGTTGATAGCTTCACTGTCCATGAATTTTCCTTTTagacaccatcatcatcaccgtCACCAAAAGCAGGATCCATGGCTTTCAGAAAGGCATTGAAGGGAACTCTAATAGGGGGCGGAGCTGTAGCTACAGCCGTCGGCCTATCACAGTTCTTTGAATACAGGAAGAATCAGgtattaatttacagtaaataccgCGAGTGTTCTTCTCAGTGGTCTCAATGTGAAGTTCTGGCCAAATCTTTTGACAAATACCACACATTTTGGTTTCACATTTCACATTCACACAGTGACTCCTACAGGTTAGAGAACAGAATAGACCGACCGCAGCTGTTCACACCCGTCTCTCCTAAAGCGTGTCTTATCCTGACTCAGGAATGTGCTCTCTGTCTTTATACAACCTTAAAGATacagcttaaaggtgcagtagctgGTTGTCTTTAGAAACAATTTGTTATGCTGGCTAGAAGTCTCTTCACATCCTGATAGCAATCATTAAATTAAGTGgtccaaatgtatttatatgtattttaatattctgtGGAAGGTCTACGAAAAGTTTGTCAAATCAGAACGTTAGGTCCAAACATTATTATAGGCTGTCCCTGCCTGTCAAAATTCAGTGCTCAGCGTAATTGAGtacaacccattttgaaaatgaatatttgtatccatttttcagtgaatataggcaatgtatttgggtgcatttgaataaaacagatttattaaacagatatatttattaaaattatattttagtcaccaaacagatttagaaattgaaagataatacaattaaattcaagctaaatattattttaaaaaaaaacaacctacaaaatttcaacaatttatttatttttccttctcttccttctcttcctctttttttaaattgtatttaatatttttccataacatatacatttgggtgtactagtttttggaccgtcaTCGTAAGGTATTTAAGTTGATacgctccagatttggcttcagtactcactaatgtatatgcacacataatattgtatagcttactATTATAAATAGGAATTTAAacgagagatttgtgaggggtgtacttatatatgctgagcactgtatgtaatTGCTAGACCCGCACagaatctgtgcatgcagaaatccacagattgttGAGCCCATCATTcgattaaatgatttaatcatgtaaatgtgtgtaaatatatattaatttactttttatatttattttagtaatattattgaataatattatattattataaataatgcggtttgtaaagtaatattattacttattagtaGGCCCACACCAAATCTGCGCGCAGAAAtccagattttccgcagatttttagcccatcattaattctgtttatttacttaagtaaatgtgtgtaaatttatatttattcagtttttaaataaatttcagtaatattattgactaatatgagaATGGTCATCAGATTTATGTACAATTGCCGTTtacacagtaatattttctgtcttttagtagagatattatatgagagacttgctttgtttaccaaataaagtggatctaattggatttgcattgtaaacattaaatcaaaGATAAAAAGATgtattaaaaagaacatattaaggttttagttatgatattccCAAAA

Function

symbol description
gpd2 Predicted to enable calcium ion binding activity and glycerol-3-phosphate dehydrogenase (quinone) activity. Predicted to act upstream of or within glycerol-3-phosphate metabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; ectoderm; musculature system; pectoral fin bud; and peripheral olfactory organ. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human GPD2 (glycerol-3-phosphate dehydrogenase 2).

GO:

id name namespace
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4869 Predicted to enable calcium ion binding activity and glycerol-3-phosphate dehydrogenase (quinone) activity. Predicted to act upstream of or within glycerol-3-phosphate metabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; ectoderm; musculature system; pectoral fin bud; and peripheral olfactory organ. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human GPD2 (glycerol-3-phosphate dehydrogenase 2).

Ensembl:

ensembl_id ENSDARG00000062430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063611 False 2130 mRNA 0.48 13 12379666 12459412
TCONS_00063612 False 2668 mRNA 0.49 17 12380487 12459412
TCONS_00063613 False 1608 mRNA 0.53 12 12390005 12456077
TCONS_00063615 True 1671 lncRNA 0.32 2 12454495 12459449

Neighbor

gene id symbol gene type direction distance location
XLOC_032663 si:dkey-276j7.1 coding downstream 65178 12299188 ~ 12314488 (-)
XLOC_032662 pkp4 coding downstream 83496 12197186 ~ 12296170 (-)
XLOC_032661 tanc1a coding downstream 207242 12036951 ~ 12172424 (-)
XLOC_032660 NA coding downstream 531180 11815169 ~ 11848486 (-)
XLOC_032659 march7 coding downstream 567442 11765341 ~ 11812224 (-)
XLOC_032666 slc15a1b coding upstream 96978 12556427 ~ 12588044 (-)
XLOC_032667 dock9b coding upstream 134537 12593986 ~ 12788539 (-)
XLOC_032668 bmpr2a coding upstream 338199 12797648 ~ 12868401 (-)
XLOC_032669 ical1 coding upstream 411295 12870744 ~ 12922018 (-)
XLOC_032670 tmbim1a coding upstream 536589 12996038 ~ 13022166 (-)
XLOC_032658 NA non-coding downstream 619798 11722431 ~ 11759868 (-)
XLOC_032655 NA non-coding downstream 961202 11417253 ~ 11418464 (-)
XLOC_032653 NA non-coding downstream 1129812 11248505 ~ 11249854 (-)
XLOC_032652 BX539326.1 non-coding downstream 1177540 11202009 ~ 11202126 (-)
XLOC_032671 NA non-coding upstream 611450 13070899 ~ 13071419 (-)
XLOC_032680 NA non-coding upstream 1280931 13740380 ~ 13746402 (-)
XLOC_032681 NA non-coding upstream 1301917 13761366 ~ 13778704 (-)
XLOC_032682 CU929360.1 non-coding upstream 1305861 13765310 ~ 13765427 (-)
XLOC_032684 dre-mir-375-1 non-coding upstream 1340644 13800093 ~ 13800172 (-)

Expression


Co-expression Network