XLOC_032670 (tmbim1a)


Basic Information

Item Value
gene id XLOC_032670
gene name tmbim1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 12996038 ~ 13022166 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063628
GCTTGTTCTCAGAATACAAATATTCAGCTTGGGTGTGTCTGCTAGTTCACCACACCTCGAGACCTGGCTGAGCTCTCACAGTGTTTTTAGTGAAGTGCTACATAATAATAAGCAGATAAACTTGATTCATTATAGTTTTCATTTGAATAGTGACCAAAACATCATTTTCATGGTAAACTAATCTTGTCGATTTTGCGAAACGCCATGTTGCAGCTGCTGTTGACTCCACCTGCTGGTTTGTAAGCATCTTGAGTCACCGAACGTCATCCATCGCCTGACTGCTGCTTTTACATACGTGCAGTTGAGAGAAGAAGGTGGACCAGGGTgtcaactgttttatttaatcaGACTCTCGAGGGATCTATCTTTTGATACTTCTTTTTTCGAGTTTCGACATCGATCGTATAACGTTAGTTTTTTTGGTTTTTGGATTACAAGACAGCGCGTGGAGTTGAAGCAGGATGTCTAGATCAGATTTCCCTCCTTCTTATGATGATTCTCGACTGCTGTCAAACACTCAGCCGGGGCCAGGTTATCCTCCTTCTGCTCCTCCATATGGATTTAGTCCATATGAGGGACAACCGGGATACCCACAGCCTAATGATCCATACCGAGGACAGCCCAATGATCCATACCGAGGACAGCCTAATGATCCATACCGAGGACAGCCTAATGATCCATACCGAGGACAGCCGGCCGGATACCCCCCTCCAGCTATGCCAGTCATCCCCGTCATGCCTCCTCCTGGGATAGGTGACAGTGAAGGATTTACCACAGCTGAAGGATTCGAGAGCACTGATGTCCGGCACAGTTTTATACGCAAAGTTTATCTGATCCTCGCTGCTCAGCTTCTTGTCACTGCTGCCGTCGtggctattttcacatttgtGGAACCAGTAGGATTGTTTGTGAGGAAGAACCCCGCCATCTACTGGGTTTCATAtgccaTCTATTTTGTCACACATATAGTACTGGTTTGCTGTCAGGGACCCAGGAGGCGTTTTCCATGGAACCTGCTCCTGTTGGCCATTTTTaCACTGGCCTTATCTTTCATGACTGGAAATATAGCAAGttaTTACAGCACTAGAGCGGTGTTCCTGGCCCTGGCCATCACAGTTGTCGTGTGTGTAGCAGTGACTGTGTTCTGCTTTCAGACGAAGGTGGACTTCACCAAATGTTCTGGCTTTTTCTGTGTACTCGGAATCGTAGTGTTTGTGACCGGCATCATCACTGCTATTGTCCTGTCATTTAAATATGTCCCATGGCTACACATGCTTTATGCATCTATAGGAGCCATTGCATTCACTTTGtttctGGCCTATCACACTCAGCTGCTCATCGGGAACCGGAAGCTCTCCATCAGCCCAGAAGAGTATGTGTTCGCTGCTCTCTCCCTTTATGTTGACATTGTGCAGATCTTCATCTTCCTCCTGCAAATCATCGGTTAcgcagagagatagatagatggatggatcagAAGGTGATTGATGTACCTTTACAGTACTGTCATAACGGCTTTATTGTTTATGCACCATGCAGTGCCTGCTCAGCCTGGTCTTAACTATAACATATACTCAAATATTACTGAACTTAAAATATAGCTGGCGTTATACTGATCAAGCAGCCGGAGTATAATTTCCACAGTTAATTATTGAGGATTTCCATCATTAAACAAACATATGCATACTA

Function

symbol description
tmbim1a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM1 (transmembrane BAX inhibitor motif containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-69 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM1 (transmembrane BAX inhibitor motif containing 1).

Ensembl:

ensembl_id ENSDARG00000058323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063628 True 1689 mRNA 0.45 12 12996038 13022166

Neighbor

gene id symbol gene type direction distance location
XLOC_032669 ical1 coding downstream 74020 12870744 ~ 12922018 (-)
XLOC_032668 bmpr2a coding downstream 127637 12797648 ~ 12868401 (-)
XLOC_032667 dock9b coding downstream 207499 12593986 ~ 12788539 (-)
XLOC_032666 slc15a1b coding downstream 407994 12556427 ~ 12588044 (-)
XLOC_032664 gpd2 coding downstream 536589 12379666 ~ 12459449 (-)
XLOC_032671 NA coding upstream 48733 13070899 ~ 13071419 (-)
XLOC_032672 casp20 coding upstream 61499 13083665 ~ 13114844 (-)
XLOC_032673 adam23a coding upstream 114436 13136602 ~ 13188667 (-)
XLOC_032674 eef1b2 coding upstream 167397 13189563 ~ 13206255 (-)
XLOC_032675 kcnj3b coding upstream 253856 13276022 ~ 13308813 (-)
XLOC_032665 CR376780.1 non-coding downstream 581709 12414215 ~ 12414329 (-)
XLOC_032660 NA non-coding downstream 1147552 11815169 ~ 11848486 (-)
XLOC_032658 NA non-coding downstream 1236170 11722431 ~ 11759868 (-)
XLOC_032655 NA non-coding downstream 1577574 11417253 ~ 11418464 (-)
XLOC_032653 NA non-coding downstream 1746184 11248505 ~ 11249854 (-)
XLOC_032680 NA non-coding upstream 718214 13740380 ~ 13746402 (-)
XLOC_032681 NA non-coding upstream 739200 13761366 ~ 13778704 (-)
XLOC_032682 CU929360.1 non-coding upstream 743144 13765310 ~ 13765427 (-)
XLOC_032684 dre-mir-375-1 non-coding upstream 777927 13800093 ~ 13800172 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_01869955_01876797 TMBIM1 coding CI01000024 null 1869671 ~ 1877521 (+)