Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_032665 (CR376780.1)

Basic Information

Item	Value
gene id	XLOC_032665
gene name	CR376780.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	12414215 ~ 12414329 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063614
CATAACAGCTAGCtctttgcaactctcacatggtcgctcactgaagctatgcagggctgcgcctggtcagtacctggatgagaaaccaaatgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000112211

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00063614	True	115	rRNA	0.52	1	12414215	12414329

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_032663	si:dkey-276j7.1	coding	downstream	99727	12299188 ~ 12314488 (-)
XLOC_032662	pkp4	coding	downstream	118045	12197186 ~ 12296170 (-)
XLOC_032661	tanc1a	coding	downstream	241791	12036951 ~ 12172424 (-)
XLOC_032660	NA	coding	downstream	565729	11815169 ~ 11848486 (-)
XLOC_032659	march7	coding	downstream	601991	11765341 ~ 11812224 (-)
XLOC_032666	slc15a1b	coding	upstream	142098	12556427 ~ 12588044 (-)
XLOC_032667	dock9b	coding	upstream	179657	12593986 ~ 12788539 (-)
XLOC_032668	bmpr2a	coding	upstream	383319	12797648 ~ 12868401 (-)
XLOC_032669	ical1	coding	upstream	456415	12870744 ~ 12922018 (-)
XLOC_032670	tmbim1a	coding	upstream	581709	12996038 ~ 13022166 (-)
XLOC_032658	NA	non-coding	downstream	654347	11722431 ~ 11759868 (-)
XLOC_032655	NA	non-coding	downstream	995751	11417253 ~ 11418464 (-)
XLOC_032653	NA	non-coding	downstream	1164361	11248505 ~ 11249854 (-)
XLOC_032652	BX539326.1	non-coding	downstream	1212089	11202009 ~ 11202126 (-)
XLOC_032671	NA	non-coding	upstream	656570	13070899 ~ 13071419 (-)
XLOC_032680	NA	non-coding	upstream	1326051	13740380 ~ 13746402 (-)
XLOC_032681	NA	non-coding	upstream	1347037	13761366 ~ 13778704 (-)
XLOC_032682	CU929360.1	non-coding	upstream	1350981	13765310 ~ 13765427 (-)
XLOC_032684	dre-mir-375-1	non-coding	upstream	1385764	13800093 ~ 13800172 (-)

Expression

Co-expression Network