XLOC_032676 (arl6ip6)


Basic Information

Item Value
gene id XLOC_032676
gene name arl6ip6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13347848 ~ 13376150 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063645
TTGAAACTCCCCAACATTCGACAGCTTTCAAATCAACAAGAAACGGAAACGCGCAAGCTAAAGACGCAGGATGTGACTCGAGCTAACAATTTCAACTTCAGAAGTTAACTGCTGGCGAGCATGCAGCGGTCTGCTAGAGATAAAGACGGCCCGTCGTTGGACATTTATTCTGACGACGAGGAGACGATTGTGTTAGCAGAAAGAAGAACTGCGATGGAGGACACTAATGCAGGTTCAAACGTGAGAAGCGAGAACCGCGGGGCAACGCCTGGGCGGCCACCTGTCCGGCAGAGGTACTGGAGGAACACACACCTGTGGCCCGCTCGTATCGGCTCTGTGCTGTGCAGCATAATCTTCGTATCGTTTATCGCAGTGTTGATCGCATTTCTTTACATCATTTTAAAAGatttaaaaacagagaaGATAACCACTGAAGATGGATCAGAAGTGCGACTCCTAGgtttTTGGAGTATTTTGGTCCTGTCTTCTATGGCTGGAGTTTTGTGTTGCAGTTTCTCCTGGACTCTAACTTACTTTGACTCCTTTGAGCCAGGAATGTTTCCTCCAACTCCTCTTTCTTCATCCAGATACAAAAAAATGACCGGACACTCTTTCCACATGGGCTACAGTATGGCTATACTCAACGGCATAGTGGCTGCACTCACTCTTATATGGTATCTCATCTGATGCACATCCTACGACACCTCAACTGCCATTTAACACGCAGTCATCAGAAGACGATTTAAGGTTTAATGGCAGAAGGAAATGTCAAATAATTTTACGGATAAAACTAcagataaaactgaaaaaaaaaaatcaagtatgGAATACTAGCTTaaacatttattacattaaatttttgtAGGTGTTTAGATACAGAATGAAACTacgtaatgttttgtttttttgagagaatttatcatattttttataaatgctaATTTTACAAATTCAGTAAACGCACAGTGAATTAATTAATGGACTACATTT
>TCONS_00063646
ATTATAAAACAGTTTTACATACACAGCAGAGGTCGAGTGTAATTGATACGAGAAGTGAGATGAACTAACCAGCGTATTTACTAACAAGTCTGTTTTTCCGTGTTGTCTAGGAAACGGAAACGCGCAAGCTAAAGACGCAGGATGTGACTCGAGCTAACAATTTCAACTTCAGAAGTTAACTGCTGGCGAGCATGCAGCGGTCTGCTAGAGATAAAGACGGCCCGTCGTTGGACATTTATTCTGACGACGAGGAGACGATTGTGTTAGCAGAAAGAAGAACTGCGATGGAGGACACTAATGCAGGTTCAAACGTGAGAAGCGAGAACCGCGGGGCAACGCCTGGGCGGCCACCTGTCCGGCAGAGGTACTGGAGGAACACACACCTGTGGCCCGCTCGTATCGGCTCTGTGCTGTGCAGCATAATCTTCGTATCGTTTATCGCAGTGTTGATCGCATTTCTTTACATCATTTTAAAAGatttaaaaacagagaaGATAACCACTGAAGATGGATCAGAAGTGCGACTCCTAGgtttTTGGAGTATTTTGGTCCTGTCTTCTATGGCTGGAGTTTTGTGTTGCAGTTTCTCCTGGACTCTAACTTACTTTGACTCCTTTGAGCCAGGAATGTTTCCTCCAACTCCTCTTTCTTCATCCAGATACAAtgcctGATAACTGGTTGTCTCTACAAGAGGCTGTTTTTCCCCTAGTCGCCGGTTCTGCTCAGGAGTGTAATACCCAGAGAAAGTAGAAGAGTTATAAGAACATGTTATCAAGGCTGTTACTCCGGCCTGAGGTTATTCACCCGTTTTTcctattttgttttttgctgtcaGCTGCCTTAGAAGCTTGTCAGCTGGTAAAATAGAAAATTGTTCCCATCTCTTTGTGGTGGTTGGACTCACCCTTGCGAGAGCACAGACTCGAAGGAGAACAGAAAAGCAATTTTCCTGTAATTGCTTTTCATCTTCAGACCTGAATACTTGCACCAAGCGGAACATTCAAAAACTGTCCCAGAATTGGTCCGCAGGGATTTTGTGGGGCTCCAGGCCCATCAAATACGTCTAAATGTCCTTTATACCAAATGCTAATGCTTTTGGAAGAGAGAGGAAGCGGAATTTGCttgaacttttttattattatcgcTCTTTCCGAACTCACTGACTTTCTGAAATGAGAAATCCTTTATTTGATTTTTGAAGGGTTAGTTCGGACAAAAACGAAagctgtcaccatttactcaacgTCAAGTCATTATGAAAACCTGAGAGATATCTGACCTTTTGAAGGTCAGAAGCAAAACTGACACTTCACAAAGTTTATAGAGACAATATACAAGTTGAAtagttcttaaagggatagctcacccaaaaatttaaattatctTACAATTTTCTCTTTCTTGTTTGGTTTGACACTTTTATGGCTTATTTTATGGATATTTTGAAAAtatcatag

Function

symbol description
arl6ip6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-117 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6).

Ensembl:

ensembl_id ENSDARG00000071013

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063645 False 990 mRNA 0.41 5 13347848 13376150
TCONS_00063646 True 1457 mRNA 0.42 4 13371237 13376060

Neighbor

gene id symbol gene type direction distance location
XLOC_032675 kcnj3b coding downstream 39035 13276022 ~ 13308813 (-)
XLOC_032674 eef1b2 coding downstream 141593 13189563 ~ 13206255 (-)
XLOC_032673 adam23a coding downstream 159181 13136602 ~ 13188667 (-)
XLOC_032672 casp20 coding downstream 233004 13083665 ~ 13114844 (-)
XLOC_032671 NA coding downstream 276429 13070899 ~ 13071419 (-)
XLOC_032677 fmnl2b coding upstream 14139 13390289 ~ 13449556 (-)
XLOC_032678 mylkb coding upstream 82107 13458257 ~ 13498745 (-)
XLOC_032679 chpfb coding upstream 322663 13698813 ~ 13716744 (-)
XLOC_032680 NA coding upstream 364230 13740380 ~ 13746402 (-)
XLOC_032681 NA coding upstream 385216 13761366 ~ 13778704 (-)
XLOC_032665 CR376780.1 non-coding downstream 933519 12414215 ~ 12414329 (-)
XLOC_032660 NA non-coding downstream 1499362 11815169 ~ 11848486 (-)
XLOC_032658 NA non-coding downstream 1587980 11722431 ~ 11759868 (-)
XLOC_032655 NA non-coding downstream 1929384 11417253 ~ 11418464 (-)
XLOC_032682 CU929360.1 non-coding upstream 389160 13765310 ~ 13765427 (-)
XLOC_032684 dre-mir-375-1 non-coding upstream 423943 13800093 ~ 13800172 (-)
XLOC_032686 NA non-coding upstream 565417 13941567 ~ 13946875 (-)

Expression


Co-expression Network