G1355834


Basic Information

Item Value
gene id G1355834
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24839435 ~ 24844715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1549813
aaaaagtaaataaaacagtaaatacattaaGATCCATACATACATGCGGTGTGCTACTGCAGAAACgacaacacgatatacagaaaataagccACTTAATTTGATAGAAatgcacacatgtccaaagtccaatttgtaaggaaaacaaccaCGAAGGCAATGCGGGCGCCAGCCAGAAAATGTGCTGTCAGAAAACGTTTGTGCAAGGCCTGTTCTGACGCGAAATGCACAATGTCTTCATACTTGATCTGGGGAAACACTAGGGAAGTGCTTGGGctctcagtaaagcctcaaatATAAATTGTtcgcaacagtgaaatgggctacttcttaTGTCAATTAACAAGGAGGTGGAACACACCTCAactcaaactgttgttagaaaactAAACTTGTTATAAAATAATTTGTAATTGACTTAATTAGCAGGCAgtgtgccttggtttgagggcagtgcgggtaactgtcctgttgcgtaacaatcactTTTTGGAACAGTGAGAGCATTCTGACATAACACGCATGAAAAAAACTCATGGAGGGGCAAcggttagagatatttggaactcacacgtGAAAaggttaatgcccatgattttgtattGAGATGCTCGacaagcaagtgtccacatactttttgtcccccatcaacacacaatatcccattatgacaaagtggaaatatgtttttagaagTTTTTCCAAATATATTAccaattaaatacagaaatactttAAGGTCAAGAATATAATAcaatggcttgcgaaagtatttcgTTGCCTTAAAATTTATTTTTTTGAGGGTTTGTGTCATTTGATTtatacaacatgcctaccactttgaagatgcaaaatactttttattgtgaaacaaacaagaaataagacaaaaaactgaacttgagtgtgcataactattcatcccctcaacgtcaatactttgtagagccacctttagCAGCATTTACAACtccaagtctcttggggtatgtctgtataagcttggcacatctagccactgggatttttgcccattcttcaaggcataACTGCTCTAGCTcctttcaagttggatgggttctgctggtggacatcaatctttaagtcataccacagattctcaattggattgaggtctgggctttgactaggccattccaatgcATTTCAATGTTTCCCCTTATTAAACCACTCaactgttgctttagcagtatgcttggggccattgtcctgttggaaggtgaacctccgtcccagtctcaaatctctggaagactggaaCAGGTTACCCTCAagtatttccctgtatttagtgccatccatcattccttcaattctgtttcccagtccctgacgatgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtggggatggtattctcagggtgatgagaggtgttgggtttgcgccagacaaagcggtttccttgatggccaaaaatctcaattttagtctcatctgaccagagtgccgtcttccatatgtttggggagtctcccacatttggcgaacaccaaacatgtttgcttattttttctggccattcttccgtaaagcccagctctgtggagtgtacggtttaaagtggtcctatggacagatactccaatctccgctgtggagctttgcagctccttcagggttatctttgatctctttcttgcctctctgattaatgccctctttgcctggtccgtgagttttagTGGGGGCcctcttttggcaggtttgttgtggtgccatattctttcaattccttaataatggatttaatggtgctccgtgggatgttcaaagtgtTAGATATTTTGTATAAccaaaccctgatctgtacttctccacaacgttgtccctgacctgtttggagagctccttggtcttcataatgccacttgcttggtggtgccccttgcttagtggtgttgcagactctggggtctttcagaacaggtgtatataatactgagatcatgtgacagatcatgtgacacttagattttgtaatttttttcatttcgcttcaccaatttggactgttttgtgtttgtccattacatgaaatccaaataaaaaaatcaaatttaaattaaaggttgtaatgcaacaaaataggaaaaatgccaagtgggtgaatacttttgcaaggcactgtatattactaTTTGAATAAAAGGCTTGTAGGGAATCTAACATTgctctatcaaATAGAATAACTCCTCTGTGCTTGGAATGGAATCACTTATGCGAGCTAGCTAGTTTTAGATGAGAGAATCAAAAGTTAGCtactagttaaaaaaaatatttaaaaatacaaCTTGCCCTTTTGCTCAAAACTTTTGTACTTTCTCAATGTCATGAATTTGTGACATTGCCAATTCTTGTTCCTGAATATATTTAGTTATTTGGTCCTCAAACTTGAACTCGAGATTTGCTGGTAACTGGTATATGAGACCGATTATGTATTGAATGAATTTGATAAGAAAGCACTTGTCATTGGCATGATATGAGGTTTTGGCCTGGGCGGTAGTGACATGCACTGTAACAATCTCTTACTATgtgctacttccagacatctaagagagagagagaacagctcactgaacattactcaccctagcaaagctggttaggctgttacagtatgttatccagagcgttggtgactgcaactgtgctttCAGATTGTCCTTTTGTAAATTTAGAGTGTTTCGCATTCAGATcgcacactggacactctggccaataagtagggttgttcccgaaagccctgacctcacaacgacagtcaagcacccaagctaactggggcggcaggaagcctagtggttagagcgttgggcaagtaaccgaaaggttgctaaatcgaatcctcgagctgacaaggtaaaaatatttcattctgcccctgaacaaggcaattatcccactgtttctaggccatcattgtagataagattttttttttaactgactttcctagttaaaaaaatatttaaaaaacattggctagctacttcctgacacataatgagagaacaccccactctgaccattttactccccctagaggagctggttaggcttttttcatgttatccagaggattggtgactaactgtgctgctggcaacaattgaatgaCACTTTGTTgatgacgtttactgacaccggacatattcaacgggtgttgagcgttcaaaAATGCAGtgtgcgctctggcacactaagaTGAGAGTATTTTgaaatgtagctagatagctagctaggtaaacaattaatCCCAATGCATGACGTAATGATAGTTAGCGAGTCAGCCAGCTAAAATTAGCTTTAACTTGAAATAAAAATACTTTGTCAAAAGtagagtggagtcttttgttaagacacatagctagctagctaaacaatggaccataatcacagctcatgatgttactaccctgcatgaatctgtagGTAGCTAACCAGCCAGGTTCTATGGCTATAACTAGTCAGGCAAATGTGTCTGAGATACGAAGAATAAGATCAtgcacataacgttagctagtgacCCAGCTAActaaggttagctagctaacagtacacttgaaag

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1549813 True 3631 lncRNA 0.40 3 24839435 24844715

Neighbor

gene id symbol gene type direction distance location
LOC110491704 LOC106579127 coding downstream 19803 24816787 ~ 24819632 (-)
LOC110491703 c1ql1 coding downstream 37743 24793546 ~ 24801692 (-)
LOC110491700 LOC106579130 coding downstream 113485 24704857 ~ 24725950 (-)
LOC110491696 crp coding downstream 226315 24611547 ~ 24613120 (-)
LOC110491691 ptrf coding downstream 286932 24528979 ~ 24552503 (-)
LOC110491706 ramp2 coding upstream 2352 24847067 ~ 24850602 (-)
LOC110491708 LOC106561205 coding upstream 40433 24884866 ~ 24889077 (-)
cd79b cd79b coding upstream 47354 24892069 ~ 24897710 (-)
scn4aa scn4a coding upstream 69443 24914158 ~ 24960389 (-)
ghrhr2 LOC106579361 coding upstream 180842 25025557 ~ 25033991 (-)
G1355847 NA non-coding downstream 80294 24757002 ~ 24759141 (-)
G1355794 NA non-coding downstream 155504 24683112 ~ 24683931 (-)
G1355783 NA non-coding downstream 169653 24669401 ~ 24669782 (-)
G1355782 NA non-coding downstream 170142 24668969 ~ 24669293 (-)
G1355779 NA non-coding downstream 174262 24664921 ~ 24665173 (-)
G1355907 NA non-coding upstream 19246 24863961 ~ 24864304 (-)
G1355908 NA non-coding upstream 20206 24864921 ~ 24870292 (-)
G1355913 NA non-coding upstream 28252 24872967 ~ 24873229 (-)
G1355919 NA non-coding upstream 38895 24883610 ~ 24883936 (-)
G1355922 NA non-coding upstream 53982 24898697 ~ 24898900 (-)
LOC110492858 LOC106579369 other downstream 805025 23995179 ~ 24034410 (-)
G1354433 LOC106581475 other downstream 1380888 23451825 ~ 23458547 (-)
G1354351 NA other downstream 1520043 23318569 ~ 23319392 (-)
G1353762 NA other downstream 1794674 23043249 ~ 23044761 (-)
G1353300 NA other downstream 2197333 22641414 ~ 22642102 (-)
G1357833 NA other upstream 1882580 26727295 ~ 26727828 (-)
LOC110491745 LOC106609103 other upstream 1884589 26729304 ~ 26744821 (-)
G1359119 NA other upstream 2267068 27111783 ~ 27113401 (-)
G1359321 NA other upstream 2512569 27357284 ~ 27359562 (-)

Expression


Co-expression Network