RNA id: TU1549813


Basic Information

Item Value
RNA id TU1549813
length 3631
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G1355834
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24839435 ~ 24844715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagtaaataaaacagtaaatacattaaGATCCATACATACATGCGGTGTGCTACTGCAGAAACgacaacacgatatacagaaaataagccACTTAATTTGATAGAAatgcacacatgtccaaagtccaatttgtaaggaaaacaaccaCGAAGGCAATGCGGGCGCCAGCCAGAAAATGTGCTGTCAGAAAACGTTTGTGCAAGGCCTGTTCTGACGCGAAATGCACAATGTCTTCATACTTGATCTGGGGAAACACTAGGGAAGTGCTTGGGctctcagtaaagcctcaaatATAAATTGTtcgcaacagtgaaatgggctacttcttaTGTCAATTAACAAGGAGGTGGAACACACCTCAactcaaactgttgttagaaaactAAACTTGTTATAAAATAATTTGTAATTGACTTAATTAGCAGGCAgtgtgccttggtttgagggcagtgcgggtaactgtcctgttgcgtaacaatcactTTTTGGAACAGTGAGAGCATTCTGACATAACACGCATGAAAAAAACTCATGGAGGGGCAAcggttagagatatttggaactcacacgtGAAAaggttaatgcccatgattttgtattGAGATGCTCGacaagcaagtgtccacatactttttgtcccccatcaacacacaatatcccattatgacaaagtggaaatatgtttttagaagTTTTTCCAAATATATTAccaattaaatacagaaatactttAAGGTCAAGAATATAATAcaatggcttgcgaaagtatttcgTTGCCTTAAAATTTATTTTTTTGAGGGTTTGTGTCATTTGATTtatacaacatgcctaccactttgaagatgcaaaatactttttattgtgaaacaaacaagaaataagacaaaaaactgaacttgagtgtgcataactattcatcccctcaacgtcaatactttgtagagccacctttagCAGCATTTACAACtccaagtctcttggggtatgtctgtataagcttggcacatctagccactgggatttttgcccattcttcaaggcataACTGCTCTAGCTcctttcaagttggatgggttctgctggtggacatcaatctttaagtcataccacagattctcaattggattgaggtctgggctttgactaggccattccaatgcATTTCAATGTTTCCCCTTATTAAACCACTCaactgttgctttagcagtatgcttggggccattgtcctgttggaaggtgaacctccgtcccagtctcaaatctctggaagactggaaCAGGTTACCCTCAagtatttccctgtatttagtgccatccatcattccttcaattctgtttcccagtccctgacgatgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtggggatggtattctcagggtgatgagaggtgttgggtttgcgccagacaaagcggtttccttgatggccaaaaatctcaattttagtctcatctgaccagagtgccgtcttccatatgtttggggagtctcccacatttggcgaacaccaaacatgtttgcttattttttctggccattcttccgtaaagcccagctctgtggagtgtacggtttaaagtggtcctatggacagatactccaatctccgctgtggagctttgcagctccttcagggttatctttgatctctttcttgcctctctgattaatgccctctttgcctggtccgtgagttttagTGGGGGCcctcttttggcaggtttgttgtggtgccatattctttcaattccttaataatggatttaatggtgctccgtgggatgttcaaagtgtTAGATATTTTGTATAAccaaaccctgatctgtacttctccacaacgttgtccctgacctgtttggagagctccttggtcttcataatgccacttgcttggtggtgccccttgcttagtggtgttgcagactctggggtctttcagaacaggtgtatataatactgagatcatgtgacagatcatgtgacacttagattttgtaatttttttcatttcgcttcaccaatttggactgttttgtgtttgtccattacatgaaatccaaataaaaaaatcaaatttaaattaaaggttgtaatgcaacaaaataggaaaaatgccaagtgggtgaatacttttgcaaggcactgtatattactaTTTGAATAAAAGGCTTGTAGGGAATCTAACATTgctctatcaaATAGAATAACTCCTCTGTGCTTGGAATGGAATCACTTATGCGAGCTAGCTAGTTTTAGATGAGAGAATCAAAAGTTAGCtactagttaaaaaaaatatttaaaaatacaaCTTGCCCTTTTGCTCAAAACTTTTGTACTTTCTCAATGTCATGAATTTGTGACATTGCCAATTCTTGTTCCTGAATATATTTAGTTATTTGGTCCTCAAACTTGAACTCGAGATTTGCTGGTAACTGGTATATGAGACCGATTATGTATTGAATGAATTTGATAAGAAAGCACTTGTCATTGGCATGATATGAGGTTTTGGCCTGGGCGGTAGTGACATGCACTGTAACAATCTCTTACTATgtgctacttccagacatctaagagagagagagaacagctcactgaacattactcaccctagcaaagctggttaggctgttacagtatgttatccagagcgttggtgactgcaactgtgctttCAGATTGTCCTTTTGTAAATTTAGAGTGTTTCGCATTCAGATcgcacactggacactctggccaataagtagggttgttcccgaaagccctgacctcacaacgacagtcaagcacccaagctaactggggcggcaggaagcctagtggttagagcgttgggcaagtaaccgaaaggttgctaaatcgaatcctcgagctgacaaggtaaaaatatttcattctgcccctgaacaaggcaattatcccactgtttctaggccatcattgtagataagattttttttttaactgactttcctagttaaaaaaatatttaaaaaacattggctagctacttcctgacacataatgagagaacaccccactctgaccattttactccccctagaggagctggttaggcttttttcatgttatccagaggattggtgactaactgtgctgctggcaacaattgaatgaCACTTTGTTgatgacgtttactgacaccggacatattcaacgggtgttgagcgttcaaaAATGCAGtgtgcgctctggcacactaagaTGAGAGTATTTTgaaatgtagctagatagctagctaggtaaacaattaatCCCAATGCATGACGTAATGATAGTTAGCGAGTCAGCCAGCTAAAATTAGCTTTAACTTGAAATAAAAATACTTTGTCAAAAGtagagtggagtcttttgttaagacacatagctagctagctaaacaatggaccataatcacagctcatgatgttactaccctgcatgaatctgtagGTAGCTAACCAGCCAGGTTCTATGGCTATAACTAGTCAGGCAAATGTGTCTGAGATACGAAGAATAAGATCAtgcacataacgttagctagtgacCCAGCTAActaaggttagctagctaacagtacacttgaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549828 lncRNA downstream 80294 24757002 ~ 24759141 (-) True G1355847
TU1549754 lncRNA downstream 155504 24683112 ~ 24683931 (-) True G1355794
TU1549743 lncRNA downstream 169653 24669401 ~ 24669782 (-) True G1355783
TU1549742 lncRNA downstream 170142 24668969 ~ 24669293 (-) True G1355782
TU1549739 lncRNA downstream 174262 24664921 ~ 24665173 (-) True G1355779
TU1549891 lncRNA upstream 19246 24863961 ~ 24864304 (-) True G1355907
TU1549893 lncRNA upstream 20206 24864921 ~ 24870292 (-) True G1355908
TU1549898 lncRNA upstream 28252 24872967 ~ 24873229 (-) True G1355913
TU1549906 lncRNA upstream 38895 24883610 ~ 24883936 (-) True G1355919
TU1549909 lncRNA upstream 53982 24898697 ~ 24898900 (-) True G1355922
XM_021565348.2 mRNA downstream 19803 24816787 ~ 24819632 (-) True LOC110491704
XM_021565347.2 mRNA downstream 37743 24793546 ~ 24801692 (-) True LOC110491703
XM_021565343.2 mRNA downstream 113485 24704857 ~ 24725950 (-) True LOC110491700
XM_021565334.2 mRNA downstream 226315 24611547 ~ 24613120 (-) True LOC110491696
XM_021565329.2 mRNA downstream 286932 24528979 ~ 24552503 (-) True LOC110491691
XM_021565349.2 mRNA upstream 2352 24847067 ~ 24850602 (-) True LOC110491706
XR_005036485.1 mRNA upstream 40433 24885148 ~ 24889077 (-) False LOC110491708
XR_002468868.2 mRNA upstream 40434 24885149 ~ 24889077 (-) False LOC110491708
XM_021565350.2 mRNA upstream 47354 24892069 ~ 24897710 (-) True cd79b
XM_036946594.1 mRNA upstream 69443 24914158 ~ 24960389 (-) True scn4aa
TU1548732 other downstream 805025 24009875 ~ 24034410 (-) True LOC110492858
TU1548290 other downstream 1380888 23451825 ~ 23458547 (-) True G1354433
TU1548204 other downstream 1520043 23318569 ~ 23319392 (-) True G1354351
TU1547563 other downstream 1794674 23043249 ~ 23044761 (-) True G1353762
TU1547043 other downstream 2197333 22641414 ~ 22642102 (-) True G1353300
TU1549855 other upstream 40151 24884866 ~ 24888644 (-) True LOC110491708
TU1552022 other upstream 1882580 26727295 ~ 26727828 (-) True G1357833
TU1552016 other upstream 1884589 26729304 ~ 26743455 (-) False LOC110491745
TU1553460 other upstream 2267068 27111783 ~ 27113401 (-) False G1359119
TU1553462 other upstream 2267519 27112234 ~ 27113401 (-) True G1359119

Expression Profile