G1360599 (LOC106579413)


Basic Information

Item Value
gene id G1360599
gene name LOC106579413
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28855595 ~ 28857375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1555046
CACCTCATACTTTTTCCTGCTAGACTTTCTAAACTTCAGTTTCAACAGAAATCGCTCTCGGACTCTGCTTTTTGAAGTCTTAAGTCTGGAGCCACTGCTTTGTGACGAGGGACATTTAGCCTTGGAGCTTTTCCCCAGAAGTCTGGCTGGGCAGAGTTCAGCCAGAGCTTGAACTGTGTTTTGAGACAGTACCACCTTGGAAACAGCACCTTTGTACCTGTTGACGGACCTCATGATACTGGCCACTTCAGGAATGTCTGTATCAGGATGGTTGAGAACAACTACCGGCTGATTTCGGCGAGGGCACTTAATCTCTTGTAGTGAACTGAATGGATACAGTCTCAGTGTCCTCTCTGCATCTTTGGGTACAGGCTCCCAGAGCAAGGGAGACCCTTTTTCAGTTACCGCCTTGCTCGAGAGCCTCCTCGCTTTAGTCAAGTGCTCTGGGAGTTCATCACACAATGCTTTCCTGCGCCTCTTCCTTTGACTTAGCTGGCGACCTGGCCTTGGGTCAAGGGGGGATTTATTCAGACCTACGTCCGTTATCTGCCTGACCCTACCTTGCAAGTTGGATTGGGGGGAAAGAAGATTTGAGAGCTGTGAGGCCGTGACAGGGTTGTGGGAGGCATTTTGTATGGATATCAGTTTTTTCACTCCCGATGAGACTTTATTTGATGACATCAGAAAACATGGCATCTGTGTGGAATTTGTGGCCAGATAAATGGGCTTGTTGGCTGAGGAATGTGTACCACCAGAAAGGAACGCGCTACCATTGGCAGTTCTGACTATCTTATATACAACTTTATTTCCCCTACTTTCATTAGGTTGACCTTTCTGGTTCACAGACTTCCCATCAGGACTATTCATAAGCATCCCTGACTTAGCGGTAGAGATATACCTAACCAAGAAGGCTTGTTGCCCAGTGTGCAATGCAGTGGATCTGTTCACTGAGTTTGCAGACATTGCCAGAACTGGACGGGACAAAAGTGGAGACTGCGAGCTTAAGCGTGCCAATTTGTTACCAGCATTGTGGGGGGCCTGTCCTACAGGGACTGGCCTCTGGACTAAGTAACAAGTCTGCGGTGACTTTATGGTATTTTCTCCAGTAGAACTATGTGCTGCACCTGACAAGACAAGAGGACCTTTAAGAGCTGTGCTGTTGACTAGGTAGTGGCTTCCACTAGTGCTAGATCCAGGCTGAACAGTAGACAACAGCATAGCACCTTTTTCACTAGCACCTACAGTCTGTCCTAGAATGCTGAAACTTCCTCCATTGAGGGTGAGTGCCAGCCCTGTGGTTTTATTCTGTCTTTCAATTCCTGGCTTAACATAGGACACATTGATATGAGGAGTAGATTTGGTTATCAGCTTGAACCCTGGGTTGCCTTGGAGCTGCACAGGTACAGCATACCGGTTCTTTGCAGTCTGTAACAACATCTGCTGCTTTCCCTCTGCTGTTTTAAGGATCCTTAGCATAGTCGTAGGTGGCTTGACAGAATCGTGGCTGGCAGCTGAGCAGCTTATTCTATCTTTTTCAAGCTGGTGGCTAATGATAGCATCCGAATGCTCCTCCAGTATGCGACCCAAGACAGCCAAACTACTTATGCTCCCTGTTGCCCTTTCCAACAAAGGAACACACTCCTCCATTTTTACAGTAGGTTGGACTTGTGTAGACCCAGAGTGTCCATGATTTGCCTTCTCAGTTTCCACTGGGGTGGCCAGATCCTCTACAATAGCTATGCACTCGTCGACCTCAACGCCACAGTCTGACACGCTTTCCA

Function

NR:

description
zinc finger protein 518A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1555046 True 1781 lncRNA 0.48 1 28855595 28857375

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding downstream 88593 28626132 ~ 28767002 (-)
LOC110491790 LOC100194624 coding downstream 314950 28535317 ~ 28540645 (-)
LOC110491788 LOC106579408 coding downstream 321418 28478779 ~ 28534177 (-)
si:ch211-180a12.2 LOC106579407 coding downstream 408924 28388779 ~ 28446671 (-)
eif3c LOC100286610 coding downstream 486251 28298253 ~ 28369344 (-)
LOC110491794 NA coding upstream 555095 29412470 ~ 29423653 (-)
LOC110491798 LOC106578369 coding upstream 817442 29674817 ~ 29702593 (-)
LOC110492894 NA coding upstream 997802 29855177 ~ 29873630 (-)
LOC110492868 LOC106579432 coding upstream 1098231 29955527 ~ 30543872 (-)
LOC110491806 LOC106579428 coding upstream 2067230 30924605 ~ 31019315 (-)
G1360594 NA non-coding downstream 8580 28846798 ~ 28847015 (-)
G1360593 NA non-coding downstream 9558 28845804 ~ 28846037 (-)
G1360214 NA non-coding downstream 24813 28830559 ~ 28830782 (-)
G1360206 NA non-coding downstream 28459 28826897 ~ 28827136 (-)
G1360202 NA non-coding downstream 30827 28824569 ~ 28824768 (-)
G1360600 NA non-coding upstream 1716 28859091 ~ 28859391 (-)
G1360602 NA non-coding upstream 2442 28859817 ~ 28860394 (-)
G1360601 NA non-coding upstream 7371 28864746 ~ 28865433 (-)
G1360609 NA non-coding upstream 21622 28878997 ~ 28879255 (-)
G1360619 NA non-coding upstream 34874 28892249 ~ 28973289 (-)
taok2b LOC106579406 other downstream 674655 28177715 ~ 28237354 (-)
G1359763 NA other downstream 691368 28163463 ~ 28164227 (-)
G1359412 NA other downstream 1327458 27527163 ~ 27528137 (-)
G1359321 NA other downstream 1496033 27357284 ~ 27359562 (-)
G1359119 NA other downstream 1742194 27111783 ~ 27113401 (-)
G1361290 NA other upstream 639738 29497113 ~ 29497555 (-)
G1361619 NA other upstream 1066496 29923871 ~ 29925154 (-)
G1363836 NA other upstream 2782062 31639437 ~ 31650697 (-)
G1364105 NA other upstream 3028374 31885749 ~ 31886112 (-)
G1364348 NA other upstream 3161419 32018794 ~ 32019498 (-)

Expression


Co-expression Network