RNA id: TU1555046


Basic Information

Item Value
RNA id TU1555046
length 1781
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1360599
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28855595 ~ 28857375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTCATACTTTTTCCTGCTAGACTTTCTAAACTTCAGTTTCAACAGAAATCGCTCTCGGACTCTGCTTTTTGAAGTCTTAAGTCTGGAGCCACTGCTTTGTGACGAGGGACATTTAGCCTTGGAGCTTTTCCCCAGAAGTCTGGCTGGGCAGAGTTCAGCCAGAGCTTGAACTGTGTTTTGAGACAGTACCACCTTGGAAACAGCACCTTTGTACCTGTTGACGGACCTCATGATACTGGCCACTTCAGGAATGTCTGTATCAGGATGGTTGAGAACAACTACCGGCTGATTTCGGCGAGGGCACTTAATCTCTTGTAGTGAACTGAATGGATACAGTCTCAGTGTCCTCTCTGCATCTTTGGGTACAGGCTCCCAGAGCAAGGGAGACCCTTTTTCAGTTACCGCCTTGCTCGAGAGCCTCCTCGCTTTAGTCAAGTGCTCTGGGAGTTCATCACACAATGCTTTCCTGCGCCTCTTCCTTTGACTTAGCTGGCGACCTGGCCTTGGGTCAAGGGGGGATTTATTCAGACCTACGTCCGTTATCTGCCTGACCCTACCTTGCAAGTTGGATTGGGGGGAAAGAAGATTTGAGAGCTGTGAGGCCGTGACAGGGTTGTGGGAGGCATTTTGTATGGATATCAGTTTTTTCACTCCCGATGAGACTTTATTTGATGACATCAGAAAACATGGCATCTGTGTGGAATTTGTGGCCAGATAAATGGGCTTGTTGGCTGAGGAATGTGTACCACCAGAAAGGAACGCGCTACCATTGGCAGTTCTGACTATCTTATATACAACTTTATTTCCCCTACTTTCATTAGGTTGACCTTTCTGGTTCACAGACTTCCCATCAGGACTATTCATAAGCATCCCTGACTTAGCGGTAGAGATATACCTAACCAAGAAGGCTTGTTGCCCAGTGTGCAATGCAGTGGATCTGTTCACTGAGTTTGCAGACATTGCCAGAACTGGACGGGACAAAAGTGGAGACTGCGAGCTTAAGCGTGCCAATTTGTTACCAGCATTGTGGGGGGCCTGTCCTACAGGGACTGGCCTCTGGACTAAGTAACAAGTCTGCGGTGACTTTATGGTATTTTCTCCAGTAGAACTATGTGCTGCACCTGACAAGACAAGAGGACCTTTAAGAGCTGTGCTGTTGACTAGGTAGTGGCTTCCACTAGTGCTAGATCCAGGCTGAACAGTAGACAACAGCATAGCACCTTTTTCACTAGCACCTACAGTCTGTCCTAGAATGCTGAAACTTCCTCCATTGAGGGTGAGTGCCAGCCCTGTGGTTTTATTCTGTCTTTCAATTCCTGGCTTAACATAGGACACATTGATATGAGGAGTAGATTTGGTTATCAGCTTGAACCCTGGGTTGCCTTGGAGCTGCACAGGTACAGCATACCGGTTCTTTGCAGTCTGTAACAACATCTGCTGCTTTCCCTCTGCTGTTTTAAGGATCCTTAGCATAGTCGTAGGTGGCTTGACAGAATCGTGGCTGGCAGCTGAGCAGCTTATTCTATCTTTTTCAAGCTGGTGGCTAATGATAGCATCCGAATGCTCCTCCAGTATGCGACCCAAGACAGCCAAACTACTTATGCTCCCTGTTGCCCTTTCCAACAAAGGAACACACTCCTCCATTTTTACAGTAGGTTGGACTTGTGTAGACCCAGAGTGTCCATGATTTGCCTTCTCAGTTTCCACTGGGGTGGCCAGATCCTCTACAATAGCTATGCACTCGTCGACCTCAACGCCACAGTCTGACACGCTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555041 lncRNA downstream 8580 28846798 ~ 28847015 (-) True G1360594
TU1555040 lncRNA downstream 9558 28845804 ~ 28846037 (-) True G1360593
TU1554645 lncRNA downstream 24813 28830559 ~ 28830782 (-) True G1360214
TU1554637 lncRNA downstream 28459 28826897 ~ 28827136 (-) True G1360206
TU1554633 lncRNA downstream 30827 28824569 ~ 28824768 (-) True G1360202
TU1555047 lncRNA upstream 1716 28859091 ~ 28859391 (-) True G1360600
TU1555049 lncRNA upstream 2442 28859817 ~ 28860394 (-) True G1360602
TU1555048 lncRNA upstream 7371 28864746 ~ 28865433 (-) True G1360601
TU1555056 lncRNA upstream 21622 28878997 ~ 28879255 (-) True G1360609
TU1555068 lncRNA upstream 34874 28892249 ~ 28897228 (-) False G1360619
XR_005036500.1 mRNA downstream 88593 28626132 ~ 28767002 (-) True afap1l2
XM_036946702.1 mRNA downstream 88594 28626132 ~ 28767001 (-) False afap1l2
XM_036946700.1 mRNA downstream 88595 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA downstream 88595 28626132 ~ 28767000 (-) False afap1l2
XM_036946703.1 mRNA downstream 90980 28626132 ~ 28764615 (-) False afap1l2
XR_002468900.2 mRNA upstream 555095 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA upstream 555095 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA upstream 555096 29412471 ~ 29423653 (-) False LOC110491794
XM_021565563.2 mRNA upstream 817442 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 997802 29855177 ~ 29863073 (-) False LOC110492894
TU1554186 other downstream 674655 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 691368 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1327458 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 1496033 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 1742194 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 639738 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1066496 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 2782062 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3028374 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3161419 32018794 ~ 32019498 (-) True G1364348

Expression Profile