RNA id: XM_036946701.1


Basic Information

Item Value
RNA id XM_036946701.1
length 3564
RNA type mRNA
GC content 0.53
exon number 20
gene id afap1l2
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28626132 ~ 28767002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCAGTGGGAACTCGCATTTTGCAGCACACGTTTCAAAAAAGCATGTGATCAAAAGAAGCGTCGGACATCATTGATCACGTGGTAATCTTACTTTGAAACAAGCATCAGTACATTATATCGGATCAGTAGTTCTTTGAAAACTGCATCGGAGCTCCGGTATCTATCTATCAAGCGTCCCTTCACGAGCTAGTGTTGACATTCACTGACCGGCTACTACAGCCTGGGATTGTCTTCTCCGAGACGAAACCGTGAGAACCGAGAGGCTTGGTCGTGCGTTGAGAATGGAAAAGCACAAAGTGCTGGATCAACTCCTGGAGGAGCTGCAGCGCTTCCTCCTGATCCTGGATCGGGAAAACCTGAGTGGGAATGCCACTGTGCAGAAAGGCATGCTGTCTGACCTGCTGCAGTCCTACAGATGCTCCAACGgtggtggtggtggtggtgatgaggagTACATCTACATGAACAAAGTCATTGTGACTGGGCAGGGTCAGGACAAAGCTGACAGAGACAACACACCAGATGCCCTGGCCAATGGGAGAGCAGGAAAACATGTCCCTGCCCCACAGAAGAGTCTTCCAGACTTGCCACCACCTAGAACAGTTATTGTAGGGAGAGAGCCCTTCCCCCAGCCCTCGGCCCCGGCCTGCTTGGAGTTTCAGGAGGGATATTACGAGGAGGCCCAGCCCTATGACTCAGCCATGAACGATGACGGCGAGGCAGTGAGCAGCTCCTATGAGTCCTACGATGAGGAGGAAGTGACCAAGGGGAAGTCGTCATTGTCAGCGCAGCACCAGTGGCCGTCCACCGAGGCGTCCATCGAGCTGATGAAGGACGTGCGCATCTGCGCCTTCCTCTGGAGGAAGAAGTGGCTGGGCCAGTGGGCCAAGCAGCTGTGTGTCATTCGAGAACATCGCTTCCTGTGCTACAAGAGCTCCAAGGAGCAGATGCCGCTGTTGGACGTGAGCCTGCTGGGATGCAGCGTGGTCTACAAGGAGAAGCAGCCCAAGAGGAAGGAGCACAAGCTGAAAATCATCCCCATGGGAGGAGAGGCCATCGTTCTGGGCCTGCAGAGCAAGGAGCAGACAGAGCTGTGGCTCAAGGTGATCCAGGAAATCAGCCCTAAACCAGCAGAGGGCTCTGAGATGCAGCACTTTGTGTCCGACTCCTCACGCCTCATTTGCACTAAGGGGGAGCTCAGTGAGAGGTACTCAGTTACTTCTGAAAGTGGCAGCAGCACAGACAGCCACGCTGAGACCCTTGAAACTAAAGATGTGAAGAAGAAATACAGTGCAGGTCTGAAGTTCAGTAACTTAATGAACATTGGCAAGAAGAAGACCTCTTCCTTAGACAGTCCGGAGAAATGTGTCGACACCTCAGgttaCCTCAATGTGCTGGTTAACAGTCATTGGAGGAGCCACTGGTGTCTGATAAAAAATGGGCAGCTGTGGTTTTACCAGGACAAGGGCAAGACTAAAGTGGCCCAGCAGCCTGTGCCTCTGGAGGGATGCATGGTCTTGCCAGACCCCAGCCCTGAGCACCTCTACTCCTTCCGGATCCAGATGGATGGGGCACAGCTAGCCACACTAGAGGCCAAGTCGTCAGCTGATATGGGTCACTGGCTGGGTCTTCTGCTATCTCAGACTGGGACTAAGACAGACCCTGAAGAACTCACCTATGACTATGTCAACTCTGAGAGGATCTCCAGCATAGTCAATGCAGCCAAGACCTCCTTGTATCTGATGCAGGGGAGGTACTCAGAGCCTAGCCCCTACAAAGACAGCCTTTCCTCGGCTCCCCACGGTTCAGATGACATTTATGACGATGTGGCTTCTATAGAGGGCGAACTAGAGGATGCAGAGGAGAACTGTCTTCTGGATGATCAGGAGAGCAGTGGTCAATGTCGTCAAGACAGCACTGGACCGTGTGGTCAAGATGgcgatgtggtggtggtggacagTGCAGGGCAGGACGCAGCAGACAGGGTTTACTTGGACCTCATTCCTGTACGATCGTTCCTGCACACGTCCTGTGGCATAGGGTCCCCAAACAAAGAACCCCTCCGCTCTTCACCCGTCCCCACTGAGGAGCAGCAAGACCTCCCTAGCCAGGTTGATTCTAGCATCATATCCGAATCAGAGCTTCCACCATCCCACAATGGAGTGGAACCCACTGCTATCACCAACAGACCTGAGCAGGAGCGCCCCCTGTCTCCCAGCCCTCTACAGCCCTATACCCAGGCTCAAAAGACCTCTCTCCTCAGCCAAgacatccagaaaagagccagTCCAGGCATACAGCACCCCCAGGCCCCCAGTACAACTACCCTTAACACACAGCCCCCCAAAACCCCTCAGAGTCCTGCAGCTACCACTCTTGCATTCAGCCTTCCCCCGCACAGTCCCCAACCTCTCAGAGGCCGGAGTGCCAGCAGTGGAGACCAAAGGACCAAAGTCTTATCCACAGCCACCCCTGGGGCCATTGAGGTGAAGCTGGGGAAGAACAGAACGGAGGCGGACATGCGGCTCTACACGGAAGAGCGTGaccggctggagagagagaaggaagagataCGGAGCAGCCTAGTCAAcctgaagaaggagaggagggagaccaAGGAGGAACTCAGCACCTGCCAAGACCCGGCGCAGCAGGCCTCCCTGGATGCATGTCTGAAGCAGAAGGAGGAGGCGTGCCGGGAGGCGGAGCATTGTCGGGTGGAGGTGGAGCTACGATTGATggatgtgaaggagagtctgagGAAAGCAGAGGCGGGGCCTTTCGTTCTGGGCACCACATTGGACAGCAGCCTCCTGGACACACCCATGGCGAAAGCAGCATCCATGGGTCCCCCACAgactccctctccccccacaaACTATGGGGACTCAGCTCCTGTCAACTCCGCCACCGCGCTAAAGAATAGACCCCTGTCAATCATGGCATCCAGCAAAGGCAACGTCCTGCAGAAGGCTAAGGAATGGGAGAAGAAATCCACCACCTAGGGGTGAGCAAGACTTTCCCTTTGATCTCTGATGACATTTGAGGTCATCATTATGACCCATGGCCAGGTCGGGTGCTATGCTTTGGCTGCACTGGGGGGCTAGGAAGTAAAggacaccaccctcaccacctccctgccCCTACACCTGCCTCTGTCCAACCAGAGAATAGGACAGAAACTAATGGCTCCACAGAAAGCCAATTAGAGACCAGGCACACCTGTCTACTGGAAAACCAATGCCACTGGACATTTCTAGATTTGAAAAATGATTTAAGTTGTTTTTTTTCCATAAAGTCACATTTTCATATTgccacatttttaaaaaatgtttaaagagGTTttttaataatatacagtattatttTTGGAAATATGGAGCCACTTTCCTCTTACACCAGCATGCCACAGGGGACGACCCCCCTACCATGTCTACCATTTGGTACAGGCTGATAGCCAAGATGTAAATACATATTACACTGTTCTGTTTACTTTTTTACTTGTATGCTAGCTAAAACTTGCActtttattaaaataaaaaaacttagTACTGACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554433 lncRNA downstream 18517 28607383 ~ 28607615 (-) True G1360003
TU1554431 lncRNA downstream 20185 28605738 ~ 28605947 (-) True G1360001
TU1554429 lncRNA downstream 27524 28598366 ~ 28598608 (-) True G1359999
TU1554319 lncRNA downstream 58252 28560316 ~ 28567880 (-) True G1359889
TU1554407 lncRNA downstream 73677 28551885 ~ 28552455 (-) True G1359977
TU1554563 lncRNA upstream 3542 28770542 ~ 28770808 (-) True G1360132
TU1554585 lncRNA upstream 20874 28787874 ~ 28788077 (-) True G1360154
TU1554589 lncRNA upstream 22325 28789325 ~ 28789664 (-) True G1360158
TU1554599 lncRNA upstream 32131 28799131 ~ 28799478 (-) True G1360168
TU1554600 lncRNA upstream 34211 28801211 ~ 28801472 (-) True G1360169
XM_021565553.2 mRNA downstream 85487 28535317 ~ 28540645 (-) True LOC110491790
XM_021565550.2 mRNA downstream 91955 28478779 ~ 28534177 (-) True LOC110491788
XM_021565552.2 mRNA downstream 93850 28478779 ~ 28532282 (-) False LOC110491788
XM_036946697.1 mRNA downstream 179461 28388779 ~ 28446671 (-) False si:ch211-180a12.2
XR_002468900.2 mRNA upstream 645470 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA upstream 645470 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA upstream 645471 29412471 ~ 29423653 (-) False LOC110491794
XM_021565563.2 mRNA upstream 907817 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 1088177 29855177 ~ 29863073 (-) False LOC110492894
TU1554186 other downstream 445192 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 461905 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1097995 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 1266570 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 1512731 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 730113 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1156871 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 2872437 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3118749 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3251794 32018794 ~ 32019498 (-) True G1364348

Expression Profile