RNA id: XM_021565553.2


Basic Information

Item Value
RNA id XM_021565553.2
length 1641
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110491790
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28535317 ~ 28540645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCCATTCTTTTTTTAGCCGGCGGCTGAAATGTGAGGGGTCACAATAGGAGGATAAAAAGTGTCCCAGGCGGACCAGGAGGTTGTCGCGAACTTTAGTCGgatcttctcccctctcttctcccagcTCTCCTCCAACCCTCCAAGAGTCAAAATGCCTCACTCATTCCCCTTCCTCACTCCTGATCAGAAGAAGGAGCTCAGTGACATCGCTCTCAAGATTGTCGCCAAGGGCAAGGGAATCCTCGCCGCTGACGAGTCTACCGGCAGCGTTGCCAAGCGCTTCCAGAGCATCAATGCTGAGAACACTGAAGAGAACAGGAGGCTGTACCGTCAGCTCCTCTTCACCGCTGACGACCGTGCCGGTCCTTGCATTGGTGGCGTCATCTTCTTCCACGAGACCCTGTACCAGAAGACCGATGCCGGCAAGACCTTCCCCGAGCACGTCAAGTCCAGAGGCTGGGTTGTAGGCATCAAGGTTGACAAAGGTGTTGTCCCCCTTGCTGGAACCAATGGAGAGACCACCACTCAGGGTCTGGATGGCCTGTATGAGCGTTGCGCCCAGTACAAGAAGGACGGTTGTGACTTCGCCAAGTGGCGTTGTGTGCTGAAGATCACCTCCACCACCCCCTCCCGCCTGGCCATCATGGAGAATTGCAATGTCTTGGCTCGTTATGCCAGTATCTGCCAGATGCACGGCATTGTCCCCATTGTTGAGCCCGAGATCCTCCCCGATGGTGACCACGACCTGAAGCGCACCCAGTACGTGACTGAGAAGGTCCTGGCCGCAATGTACAAGGCTCTGTCCGACCACCATGTCTACCTGGAGGGTACCCTCCTGAAGCCCAACATGGTCACTGCCGGACACTCCTGCTCACACAAGTATACCCACCAGGAGATCGCCATGGCCACCGTCACGGCCCTGCGCCGCACCGTGCCCCCAGCAGTTCCTGGCGTCACCTTCCTGTCCGGTGGCCAGTCTGAGGAGGAGGCATCCATCAACCTGAACGTCATGAACCAGTGTCCCCTGCACAGGCCATGGGCATTGACTTTTTCCTATGGCCGTGCCCTCCAGGCATCCGCCCTGAAGGCATGGGGTGGCAAACCTGCGAACGGAAAGGCTGCCCAGGAGGAGTTCATCAAGAGAGCTCTGGCCAACAGCCTGGCCTGCCAAGGCAAGTATGTCGCGTCCGGAGACAGCACCGCCGCTGGAGAATCACTGTTCGTGGCCAACCACGCTTATTAGGCATGGACACTTTACCAGCATCCCTCTCCTAACCCTCACACCATCTCCCTGTACCCGCCACCCTCCCCCACATGGGGAGTGCCATGTCTTATTCGGCACCTCCTAAGAAGCCGTCTCTACTCGACCCTCTGCAACATTACTCGTTTGGTACCTCAgcacggagaaagagagagaaacggaaACCTTTCTTTGGGCTCTTGCTTCAGAGAGAAgattacaaaaaaaatgtgttctgcctccattccctctccctaCCATTTCACACCTTTTTTAAGGTGAAGAGATTCCCATCGTTGTGTTTTTACAAAACATGTAATATTATTCCTGGGTCTGTAACACCTAACTCAGTATAATGTTTGTAATGGAGCCATGGAATAAAGTATGTATCCACAATA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
K01623 ALDO; fructose-bisphosphate aldolase, class I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554320 lncRNA downstream 34076 28492426 ~ 28501241 (-) True G1359890
TU1554325 lncRNA downstream 62088 28472188 ~ 28473229 (-) True G1359895
TU1554329 lncRNA downstream 65535 28469532 ~ 28469782 (-) True G1359899
TU1554226 lncRNA downstream 221910 28274766 ~ 28313407 (-) True G1359812
TU1554185 lncRNA downstream 357761 28177272 ~ 28177556 (-) True G1359773
TU1554404 lncRNA upstream 7635 28548280 ~ 28548519 (-) True G1359974
TU1554406 lncRNA upstream 9110 28549755 ~ 28549981 (-) True G1359976
TU1554407 lncRNA upstream 11240 28551885 ~ 28552455 (-) True G1359977
TU1554319 lncRNA upstream 19671 28560316 ~ 28567880 (-) True G1359889
TU1554429 lncRNA upstream 57721 28598366 ~ 28598608 (-) True G1359999
XM_021565550.2 mRNA downstream 1140 28478779 ~ 28534177 (-) True LOC110491788
XM_021565552.2 mRNA downstream 3035 28478779 ~ 28532282 (-) False LOC110491788
XM_036946697.1 mRNA downstream 88646 28388779 ~ 28446671 (-) False si:ch211-180a12.2
XM_036946698.1 mRNA downstream 88646 28388779 ~ 28446671 (-) True si:ch211-180a12.2
XM_021565544.2 mRNA downstream 165973 28298253 ~ 28369344 (-) False eif3c
XM_036946703.1 mRNA upstream 85487 28626132 ~ 28764615 (-) False afap1l2
XM_036946700.1 mRNA upstream 85487 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA upstream 85487 28626132 ~ 28767000 (-) False afap1l2
XM_036946702.1 mRNA upstream 85487 28626132 ~ 28767001 (-) False afap1l2
XR_005036500.1 mRNA upstream 85487 28626132 ~ 28767002 (-) True afap1l2
TU1554186 other downstream 354377 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 371090 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1007180 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 1175755 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 1421916 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 956468 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1383226 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 3098792 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3345104 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3478149 32018794 ~ 32019498 (-) True G1364348

Expression Profile