RNA id: XM_021565550.2


Basic Information

Item Value
RNA id XM_021565550.2
length 6209
RNA type mRNA
GC content 0.40
exon number 30
gene id LOC110491788
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28478779 ~ 28534177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGTTCCTCTTCTCAAACTGACACAGCCTTAAGACCTCAGAACTCAGACCTCTCCTTCCATTTGTGTGTTCATACGAGCATGACAATGGATTGGATAATACCCCTTTCTTTCTACTTATCAGTGCCTCAAGGTGCTTTGGCTTTTAACATTGACCCAGCTGCTTGGAAGTATGTCAGCGAACCTGCTGCTGGGTTTGGATACAAGGTGGTACAGAATAACCCATCAAGCTTGCTTATAAGTGCCCCCCTGGATCAGTATAAGCAAAATAGGAGGGGACAAGTTTACCGATGTCTGGTCAGAGATTCATCTTGCATACCATTGTCAATACAAGAGCCCAGTCATGGGATCAATATGTCTCTTGGTTTGTCAATGACAAAGGATCCCGAGTCACTAAACACCATGGTATGCGGACCAACCATCCCAAGAGAGTGCAAATCCATCACCACCTACAATGGGATGTGCTTTGAAATTGACCAAAGTCTTCATGTGAAACAACCTGTCCCTTCATCTCTGGAAGAATGTCCTGGACAAACAGACATAGCCTTTCTATTGGATGGGTCAGGAAGTGTTAACAAATTTGATTTTGAAAAAATGAAAGACTTCGTGAAAGATCTGATCAGGGAATTTCTGGAAAGGGATACTAAGTTTGCAGTTGCCCAGTATTCAGGCTATTGTACTATACATTTTGACTTAAATACGTTTAATGTCATGAATCGGGATTATCAAGTGAATAGTATTACTCAACAAGGTGGAGGGACTTACACGGCAGCATCCATGAGAAAAGTTGTCCAAGAGGTCTTTTCAACGAGTAGAGGATCCAGACCAAAGGCAAAGAGGATCATGATAGTCATTACAGATGGACAATCAAATGACAGCGGGATGCTGAAAAATGCAGCCTCTGAGGCTGAAGCCAAAAACATTATTCGATTTGCCATTGGGGTGGGCAGAGCCTTTTCTTCGTCCTCAGCAATGAAGGAGTTAGAAACAATTGCCTCCTCTCCACCAAGCAACCACGTGTTTCAAGTGGGCAGCTTCCAAGCACTTGACCAAATCAAGGATACATTACAGAACAGCATTTTTCCTATTGAAGGATCTCAGACTACTGGGGAATCTATTAAGATGGAAATGGCCCAGGAGGGATTCAGTGCAGCATACATTCCTAGGAGAGGATTCCAGATGGGAGCTGTTGGAGCCTTCCAATGGAAGGGGGCTTACCAGGAATACAAAGGCAGCACTTTAGACCCTACACCACAACAGAGTCAGAACATGGAACCAGATAGCTATATGGGGTACTCCATGGCAGTTGCTACGACACACACTCGCCAGTTTACCATTTTAGGTGCTCCAAGATTTAAACACACTGGACGAGTGGTGGTTCTTCCGTCCAGAGACACAGACAAGCCGATAGAATATTCTGGACAGATTGGCGCTTATTTTGGTGCAGAGGTCTGTGCAATGGATGTGAATAAAGACTCATATAGCGACCTAGTCCTCATATCAGCTCCGATgttcacagacagagacagagagggcagggtATATGTCTGTACCATCAATGACTGGTCTGGGGTGGCCTGTCAATTAAATGCTGAGATGACACTGGTGGGGGATGCAGGACAAATGGGCAGGTTTGGAACTTCTCTTGCCCCACTGCCTGACCTGAATATGGATGGATTTAATGATTTAGCAGTCGGAGCACCTCTAGAGAACGATGGTCAAGGAAGTGTCTACATATTCCATGGGACGAGTAGTGGAATCAGCAAAATCAAATCTCAGAAAATTTCAGCCTCAGATGTACAGTCTGGATTAAAGTATTTTGGACTGTCCATCAGTCAGACTTCCCTGGACATGAGTTTGGATTCTCTCCCAGACTTGGCCGTGGGATCAAAGGGGGCTGTTCTCTTACTCAGgTCCAGGCCTATTGTAACATTGATGGCACGAGTTTCCTTCAACCCACCCAAAATCCCCACCAACCAGGTGGACTGCAGTACACCTCTGAGAAACATTGCTAAAGTCTGTTTCACCATGACCAGACAAACAACAGACACAAAAGATCTTCAAGCAAAGATTAACTATACTTTAACTCTGGATGTGACCCGCCAAGCTCCAAACTATCGTGCTTATATCAGTCCAAAGATACGGGAGGAAACGAATACTATTACATTAAGACTTCAAGAGCAATGCTTCTCTCATAACTTCTTTATTGAGGCTTGCCCAGAGGACTCCCTCAATGAACTGTCCAATGAACTTGACTTCACATTTGAAGGGTTGCCAACAACATCTCCTGGTGGCCTCAGCTCTAGCCTTTCCCCGCGGTCTCCGACTTCAACATATCATCCTTTAGGTTTTGAGATCAACTGTGGCGCTGATAACAACTGCATTGACAACCTGAAAGTGGATTTTAATTTCACTAGGAGTTCAGAGGTGAGGGTTGGCATAGATGAGGTGATAAATGTGACAGTGTCAGTCGAAAGCAGGGAAGAGAACTCTTACAACAGCCACGTTATTCTCAAATACCCTGCAGGACTTTCATTCAGGAAGTTCACCATACTCCAGGGAAGAGTGGAGTGTAACTCATCAGACAGTGTGGGAAATGTAATGTGGGGACTAAGTGACTGCACCATTGACAAGCCAATCTTCAAAAGCGATTCTAAGGCTCTCTTAGTAATTTCCTATGGGATTGATAGAAACACTCAATTTGGCCAAATGATGACATTCATTGCAAATGCCTCAAGTGGAAATACACACTCGCCAAAGAGTGAACTTTCCAAAGTGAAAGAGATTGGTGTGAAATACAGCATTTTTGTTGTGATTAAAAGAAATGAGGATTCAACCAGTTATGTTAATTTCACTGCCGGGAAAAATGATTTGCAGAAACATGTGAAACAATCCTTTGAGGTTGAAAATTATGAAAGAGGCTTCAATCTTACTGTGATAATCAAGGTGCCAATGAAGCTTGGTGACAAAGACATCTGGGCTGATCCAAATGGTATACAGATTCAAGGTTGTCAAAGACACAAGAATGAGGAACCTACTGCCACAGAGTTTGTGGACCAGCTGCAGAAAAATCATGCTGTGGACTGCTCTGTCGCAAATTGTGGGGTGTTCATGTGCAAAAGCTTCATTCGAAATTTGGATCGTAACTCTTATAACATCACTGGTAACCTCAGCTCTCAATGGATAGAACAGaTTGGTCTTGAGTCTGCCCAGTTCAACTTGGTCAGCAGTGCCACTGTAGATTATGACAGAAACCAATACATCTATTATTCTTCGGACTCCAAAAACAACCCACCTATACAAAAGATTGAAACTCAGGTGGAGGTGTATCCTGAGGTTAACTTCACAAAGGGGGTCATTGGGGGTGTTGTGGGAGGTCTGCTGCTGTTAGCTTTGATCACAGCTGGGCTTTATAAGgcTGGGTTTTTCAAAAGCCAGTTGAAGCAGATGATGCAGAATACATCAGAAGATGGACCAGGGGGTGATGGAGAAGCTGCCTCGCCTGAATAACAGCAAACAATTGGACATGCTCACTGAATGTGTACAAatattaaaggggaagttcaggattttacaacttgatgttagatggttcctcaccgAAAAAGTAGTCTATGGGTCAGGAAAATCAGTAAATCGTGGTTCGGTTTTCTTTAAATCTACTACAAACTTCAGCTAACTTGAGCCACTGCTAACAAAAAAACGATGCTCGTGATAGATGCAATCGTGCAATTTAGAAATGTTATCGGCCAAATCAACTACATAGTTGGTTTTTCGTTACTTAACAAACCTTTACCGCATAATGTTACCATGTGGCAACATATAATTTCTCTTTACCCCCTTACTTCCCTAAATGAAAAAATACACCATGGCCTTTTAACTAGATAATAACTAGCTACCACGCACATAACTAGCTAAGAGCTAGTTATTCATTTGCTCCACAAATGATTATCATAAAACAATCATCTTTACATCTCCCCCTCCACCCAAAAAGATAACATTTGGCCAAGATAACATACGACTTTATTTACATATGCATggaaaatacaattatttttatatgtataaatatataataGGGCAAGATTTAATAGTTTTTTTAAGAAAACATATTTTCAGAAAGTGTGAAGGAATAAAACAATACAATTATAATTCAAACACCTCATTTTTATTAGAAAACCCAACTACTAATATCATTAATAAAAGAGTATTACCGTTGTCGCAGTATTTCCATATGGCAACATACAGTTAAATAAAActtttaaaatagattttttcaaACATtgttctacatttgtttttgaggCCATTTGAAGTGATAAAAAATGGAAGTGATAGGGGGCATGGTTCTATAATAACGTGTGCAGTAAAGGGAGATTTGGCCATTGTAAATCATTTGCACAATTGCCACTATCACTTCCATTGATTGTTAGCTAAcagtggctaaagttagctgaagTTTGTAGTGTGTGACCACTGCATTTAAGCTGGTACACCATTGACATTTTAATTGAATTAACATTTTAACTTTGCATTATTACCAACAAGATGGCCACCGGTCCAACCCTGTTGAATGTTAACTTGAATGGGAATGTCCTATTATCCATTTTTCTGtgatttcaataggtttcctatggaAGATTGACAACAGAATTTAGAATAATggatattcccattcaagtcaacattcttTGATGGGTGGACCTGCAACCTTGTTTGTGGTACCATTTCAAAGATACAATTTCAATTTTATTCAGATTTTAGTATGTATGGAAAAATATGTATGGAAAGATTATTTCAAATCAAAAGAGGTCAAAATGCACCAAAGCATATGGATCAACTCAGAAAGTTATTGTAAATAAAAAGTTAACCTCCTGGCAACTATCTGCCTACTGTAAAATGCTCAGTAACCCCTTTACAGTGCAGTTCTTCTCTATTGTCGCATGCTCTTACAAAGACTGCAGAATTGGTAGTGGACAAAAGAGGTGCTCAACCTCAATTAACATAACCATAGACCACTTAAACTGGTGCAACACTTCCACTAACCAACGTTTGGCACAAAACAGTACCATGTGAGATCATATAAGTACCTCTGAAGGTGCCTTATgtgtatattttacctttatgtaCCCCAGGGAACAACACTGTACCCTAACCATACCCTTATTATGTTCCTGGTAATAAATATGTACCTGGTGGCAATGCAGAAACATCAACACACCTCTGACCAAGAGGTTCCAAGTTTACTGGAATCAGAATACAGCAACATACCATAGTTATTTTAGGGCAATAACACCCTTGTAAAttgtatatttactgtatttttACTGCTACTCAGTAGCCAGTGTTTACTgtaatatataataattataGATCATTTATAACAGTCTGAGAAACCTTTAGCAAAGTGCAGAAATTTATTCTTCCCAATAAATCTGTGGCCAATCGCTGCCATGCCCAAAAAGCAGAACATTTCTGGTCACTGGCAACcagaaggttgtaagttcaaatcccaggaGAGGTTGAATCCCAAATGTCCTTTTACAGCAATAACATCTTAATTCAGGTGTAAAAAACATATTCAAAGATATTGTAATTTCAGATGTTTGAAGCTTGTGTACAAAAATGAAAGTTAAAGATGCAAAAACGATGCTTAAGAATGGGacgcatagaaatagcgcacatagaacacatctagcacttcttagacttgctttcaatgataatgacagatctataactcacatttctatgtgaatttggtcaggtcacccaaaaggttacatattgcagctttaaattaGGAATCTTGCAGCTTTAATTTTAACATTTCTTATGAAACCTTCTGGTATTTGTATGGCACAGACATTGTGCTACATagtaaatgtttgttttattgttCTTCACATTTAATTGACACAGTGACTAGATAGCATGCTTTAAATTCATCCCCTATCCTTGTGCTACTGGGTACCAATGATCATGTTCATAATTCCCTCCAAAAATGAATGAATCCAATCTTCCAACTGGCAAGATATCCATCTGTTTGTTGGAAGATTGGATTCATTTTTGGACATGATCTTTGGTTTCCAATTTGCAATAGCTTAGAGCTTACAGTACATGTCATGAGTTAGTTTAGTCTATTGAAACATACCAAGCATGACAATAAATGTAAATATTTCTACAAAATAAACTAACTGGCAAAAAAA

Function

GO: NA

KEGG:

id description
K06461 ITGAM, CD11b; integrin alpha M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554325 lncRNA downstream 5550 28472188 ~ 28473229 (-) True G1359895
TU1554329 lncRNA downstream 8997 28469532 ~ 28469782 (-) True G1359899
TU1554226 lncRNA downstream 165372 28274766 ~ 28313407 (-) True G1359812
TU1554185 lncRNA downstream 301223 28177272 ~ 28177556 (-) True G1359773
TU1554183 lncRNA downstream 301572 28176957 ~ 28177207 (-) True G1359771
TU1554404 lncRNA upstream 14103 28548280 ~ 28548519 (-) True G1359974
TU1554406 lncRNA upstream 15578 28549755 ~ 28549981 (-) True G1359976
TU1554407 lncRNA upstream 17708 28551885 ~ 28552455 (-) True G1359977
TU1554319 lncRNA upstream 26139 28560316 ~ 28567880 (-) True G1359889
TU1554429 lncRNA upstream 64189 28598366 ~ 28598608 (-) True G1359999
XM_036946697.1 mRNA downstream 32108 28388779 ~ 28446671 (-) False si:ch211-180a12.2
XM_036946698.1 mRNA downstream 32108 28388779 ~ 28446671 (-) True si:ch211-180a12.2
XM_021565544.2 mRNA downstream 109435 28298253 ~ 28369344 (-) False eif3c
XM_021565553.2 mRNA upstream 1140 28535317 ~ 28540645 (-) True LOC110491790
XM_036946703.1 mRNA upstream 91955 28626132 ~ 28764615 (-) False afap1l2
XM_036946700.1 mRNA upstream 91955 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA upstream 91955 28626132 ~ 28767000 (-) False afap1l2
XM_036946702.1 mRNA upstream 91955 28626132 ~ 28767001 (-) False afap1l2
TU1554186 other downstream 297839 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 314552 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 950642 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 1119217 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 1365378 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 962936 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1389694 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 3105260 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3351572 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3484617 32018794 ~ 32019498 (-) True G1364348

Expression Profile