RNA id: TU1555049


Basic Information

Item Value
RNA id TU1555049
length 578
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1360602
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28859817 ~ 28860394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttgtgaaaaCCCAACACTTCAATATTGCATTTTATAACTAAGCTAGTCATGCTGGCAAtggaacaagctttcaaatgatgcccacctgacccagattgtgatttataatggaccgtttttggattgagtaaacaacagtaattgtgcaATTGCAGgaagacagggttgtgttctaaacaaaacaactaaaagtgtgcttgctctagttcctcaatggCACAGTTAGGCATAGCTCAAAAAGCACctttatagttgaagtgtactgaAATTACTtgggaactgtgcacactttgcagaggtgtgtggccacttggagacaccagttagtcctctaaCTTCTTTGTCTTATTTTGCACCTAACCCACATTTTCCAGGAAAATTCTTATGTTATTGAATGTATTTTCCAGAGTATTTTCTGATTTTATTATCAACAAATGCAGAGAAAGtcaatgtaaaatgcacataaactCAACAGTGGACTGTCAGGTGAATCGTTGTCCTCACCTTTGGTCTAATAATGTTCCCATGATCgtcaaactgttccctttcaattgctactaTAGTTATGCATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555047 lncRNA downstream 426 28859091 ~ 28859391 (-) True G1360600
TU1555046 lncRNA downstream 2442 28855595 ~ 28857375 (-) True G1360599
TU1555041 lncRNA downstream 12802 28846798 ~ 28847015 (-) True G1360594
TU1555040 lncRNA downstream 13780 28845804 ~ 28846037 (-) True G1360593
TU1554645 lncRNA downstream 29035 28830559 ~ 28830782 (-) True G1360214
TU1555048 lncRNA upstream 4352 28864746 ~ 28865433 (-) True G1360601
TU1555056 lncRNA upstream 18603 28878997 ~ 28879255 (-) True G1360609
TU1555068 lncRNA upstream 31855 28892249 ~ 28897228 (-) False G1360619
TU1555067 lncRNA upstream 107655 28968049 ~ 28973289 (-) True G1360619
TU1555251 lncRNA upstream 298639 29159033 ~ 29169741 (-) True G1360789
XR_005036500.1 mRNA downstream 92815 28626132 ~ 28767002 (-) True afap1l2
XM_036946702.1 mRNA downstream 92816 28626132 ~ 28767001 (-) False afap1l2
XM_036946700.1 mRNA downstream 92817 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA downstream 92817 28626132 ~ 28767000 (-) False afap1l2
XM_036946703.1 mRNA downstream 95202 28626132 ~ 28764615 (-) False afap1l2
XR_002468900.2 mRNA upstream 552076 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA upstream 552076 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA upstream 552077 29412471 ~ 29423653 (-) False LOC110491794
XM_021565563.2 mRNA upstream 814423 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 994783 29855177 ~ 29863073 (-) False LOC110492894
TU1554186 other downstream 678877 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 695590 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1331680 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 1500255 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 1746416 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 636719 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1063477 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 2779043 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3025355 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3158400 32018794 ~ 32019498 (-) True G1364348

Expression Profile