XLOC_000033 (urp2)


Basic Information

Item Value
gene id XLOC_000033
gene name urp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1599979 ~ 1614500 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000062
ATCTTAGAGGCGCATTGGTGCATGAAAATTGGCAGGCATCTGAAGACAATATACTCATTTAGGTATCTGTAGAATCTGCTTTGCTGCACGGTCTCACCTTTAGGTTTCTGAGATGTTTAGGGTGCTGAAAGTATTGACCACAGTTGCTCTGCTGACTGTCGCTTCAATCGTGGATGCTGCTCCACTGATGCCCGGAGAACCAGATGCCTTTAAGGAACCAGCTGATggagatCCAGGAAGAACTGAagcaaacactgaaataaatacagCACTAATGAAGCAACTGAGGAGCAAAACACTGACGACATTTCCTGACGGAGATGGAAAAACTGTAGCGACGCGAGCATTAGATGAAATAATCACAGCAACAAGCAGCCCAAATAACAGAGACAAGAGCTTAAACACAGGAATCAGTAATCTATTAAATACACTGACAATGCTCTCCGATGGACACGAGGAGACCGAAGGCCATGATGAATCTCCCGAAAACAAAGAACTGATGGAGATTACAGAAAAATCTGATCCTGGTCCTCCAGAAGAGCTGCTGAAGATGCTGAGTGCACTTGAAGAGCTGCACAAGTTCATCAACAGCCACCGGATCACCATCATTACCAGAGGAAACAGCAATGGACGAAGTACAGGGAAGAAGAACAAAATGGTAGTGACGGATGGAAACCTCAAATCCACCACAGCGACCACTATAGACAGCGGTGGCATCTCACCCAAAGCCAGCACTGACCAAATGGACCCCAAACTTAATGGAAAATCCTTTAAAAAGTCTCTTCCGTCAACCAAGAAAACCAACAAGAGAGTGTGCTTCTGGAAGTACTGCTCTCAGAACTGACCCTCGCTGATTTCTGCAAACGGCCTGCAACAAATCCTGTTCTCAAACACGGATGCTTAAACTCTTCCCAGCGGAGCCTCAATAACACGACTGACCCTCTGCCCTGTGACGTGTGTACTGTACCTTTAACTATGTGCACCAAATTATGTTAACTTTCCATCTTGCAGCGTCTTCCTTGTTGCAAGCTCCAATAAAACATGACACTGCATGCAAAAA

Function

symbol description
urp2 Predicted to enable hormone activity. Predicted to act upstream of or within blood vessel diameter maintenance and regulation of blood pressure. Predicted to be located in extracellular region. Is expressed in nervous system.

GO:

id name namespace
GO:0008217 regulation of blood pressure biological_process
GO:0097746 blood vessel diameter maintenance biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110718-3 Predicted to enable hormone activity. Predicted to act upstream of or within blood vessel diameter maintenance and regulation of blood pressure. Predicted to be located in extracellular region. Is expressed in nervous system.

Ensembl:

ensembl_id ENSDARG00000067781

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000062 True 1060 mRNA 0.45 5 1599979 1614500

Neighbor

gene id symbol gene type direction distance location
XLOC_000032 NA coding upstream 21728 1571847 ~ 1578251 (+)
XLOC_000031 NA coding upstream 239148 1358731 ~ 1360831 (+)
XLOC_000030 NA coding upstream 257742 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 coding upstream 381174 1218691 ~ 1218805 (+)
XLOC_000028 NA coding upstream 566341 1015812 ~ 1033638 (+)
XLOC_000034 NA coding downstream 2703 1617203 ~ 1619314 (+)
XLOC_000035 atp1a1a.4 coding downstream 75275 1689775 ~ 1706159 (+)
XLOC_000036 atp1a1a.1 coding downstream 97640 1712140 ~ 1796832 (+)
XLOC_000037 atp1a1a.3 coding downstream 190794 1805294 ~ 1815660 (+)
XLOC_000038 atp1a1a.5 coding downstream 223664 1838164 ~ 1850104 (+)
XLOC_000043 NA non-coding downstream 387216 2001716 ~ 2005632 (+)
XLOC_000044 NA non-coding downstream 408909 2023409 ~ 2023645 (+)
XLOC_000049 CR352215.1 non-coding downstream 661105 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 788603 2403103 ~ 2403224 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_04741460_04746667 NA coding CI01000299 null 4741447 ~ 4746667 (-)