XLOC_033060 (dre-mir-200c)


Basic Information

Item Value
gene id XLOC_033060
gene name dre-mir-200c
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40656204 ~ 40656288 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064246
TGGATGCCTGGCTCCATCTTACAAGGCAGTTTTGGATGTTATATCTTCTCTAATACTGCCTGGTAATGATGCAGATGGTCATCTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000080713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064246 True 85 miRNA 0.42 1 40656204 40656288

Neighbor

gene id symbol gene type direction distance location
XLOC_033059 dre-mir-141 coding downstream 119 40656003 ~ 40656085 (-)
XLOC_033058 dre-mir-429b coding downstream 2966 40653129 ~ 40653238 (-)
XLOC_033056 NA coding downstream 27043 40625631 ~ 40629161 (-)
XLOC_033055 CU855953.1 coding downstream 30784 40625304 ~ 40625420 (-)
XLOC_033054 tspo coding downstream 72951 40578219 ~ 40583253 (-)
XLOC_033061 NA coding upstream 3666 40659954 ~ 40661324 (-)
XLOC_033062 CR450814.2 coding upstream 11059 40667347 ~ 40667463 (-)
XLOC_033063 si:ch211-157b11.14 coding upstream 33069 40689357 ~ 40697585 (-)
XLOC_033064 si:ch211-157b11.12 coding upstream 50874 40707162 ~ 40713204 (-)
XLOC_033065 kbtbd12 coding upstream 59349 40715637 ~ 40722480 (-)
XLOC_033052 NA non-coding downstream 174006 40477430 ~ 40482198 (-)
XLOC_033070 CR450814.1 non-coding upstream 139610 40795898 ~ 40819766 (-)
XLOC_033074 NA non-coding upstream 199851 40856139 ~ 40864078 (-)
XLOC_033076 CR293534.1 non-coding upstream 290069 40946357 ~ 40946475 (-)

Expression


Co-expression Network