XLOC_033129 (zgc:66479)


Basic Information

Item Value
gene id XLOC_033129
gene name zgc:66479
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46736251 ~ 46742455 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064382
GCAGCGCCATGAAACTGAGACCGCCTCCAGTGCGCAACGCCCCCTACTCGCGCTCCTCGTGCTTGAAAGTTCACTTTTGATTTTTCCCCGTCGTTGTGGACCAATACAGCCGTCACCTAATCACTGAATAAATCAGTGAAAGGGGGAGAGTTGCAGGCTACCGTGCAGATCCTCCGCAAAGCCAAGATGACCAAGCGCAAAGGAAAAAGTACCAACAAACAGGACGACAGTTTGCTGCTCTTGGAGACGCCATCCGTAACTCCACCGAGGGGATTTAAAGAATATGCGGTCCCTGccattgttttctttattttcgcTGTCGGGGGATCAACAGCAGTCTGGTTCTGCTGCCAGCAGCAGCAAACTATTGACAGTCTGACTGAGACGGTCAATGCAATGCAACTCAGGATAACCAAGTTCCAACAGCAGTTGGGAATGGGTAATGCACAGGTTGCCAATGTTGGTGTTTTTGAAGAGCGTCTACAAGCTCTGGAAGAGGCCTACACACAGGCCCAAAAAAAGGCAGATGTTGCACTGGCCACCTCAGAAAAACTCAAATCTACTGATGTTCAAAACCAAGTCTGGTCTCTTCAGACCGAGATGAACACCAAACTTTCTGGACTCCAGCAGGAGTTTGTTTCCACTGCTTCGCTGAATGCAGTTGACAAGAATAAATCTGAAGAGATCGAAACACTGAAGCAGAGGCTAAATTCTCTCCTTGCTGCTAACTCTGAGGTATCCGTTACCATTTCTGGGCTCACTGACACTGTTTTGGTCACCAAATCACGTCTCGACGAGCATGTGTCTGCTGTAGAAAGTCTCACATCTGAGCTGGAGGAACAAAGAATTGAACTTACAAGCCTGAAGGAATCTTTTGCCAGCAATAAAAAGGCTCTTCAAAGAAACAGACAGGAAGTGATGGACATCAAGGATTTGCTGCAGATGGAACAAGCAAAAGAATCCCAAGCCCTTGAAGAGCAACTTATGAGTGTTCGAAGGAGCCTGGAAGACCATCAGAAGAGTACTCATAACCTTCACTCTCACCTTGCTGCCCAACTTGAGATCGTTCAGAGTCAGATGCTATCTGAAAGCCAGGAGTTTGATTCAGAGGAAGAGATTCCAGAAGAAGATCAGCAAGCCGAGCAAGTACCAACTCATGGAGAAGTTCCAATCCATGATGAAGTTAAAGTTGAAACCGTCACTACAGAGGACACTTTAGCCAAAGAGATTAATTCTGAAGAAGCAGAGCAACTGGAACAAGAGGTAGAAGAGCCAACTGAGCAGGTTAAAGTCCACGAGGAAGAACCCACAGATGGGAATGAAATTTCTGAAGAGGCTGAGGCCAAAGAAGTTGTTGCTGAGGAGGTTGAACAAGATGATGAGGATCCATTCTACCAGGACGAAGAAAAACCTGACGAGCTGCAGGTATTTGATGAGGAGAAACCAACTGAGGAGGTTCCAGGCCAGGGGGAAGTAGAAGACATTGAGAAGCAAGATGAAACTGTGGATGAATCCAAAACTGAGGCATTTGAGGGCACAGATGGAGATGTGATTGATGAACAAGCAGTAACTGAGGAGGAAGTGGTAACCGAGGAAGATGAAGGCATGGATGAAGATGTGATTGATGAACAAGGAGTTACTGAGGAGGATGTGGAACCCGAGGACGTAGAAACCATGGCTGGAGATGTGAGTGATGAACAAGCAGTATCTGAGGTTCCAGTCCAGGAAGAGGAAGCTGTTGACGAACAAATAGAAAATGTTCCTGCCATGGAAGTCCAAACCTACACGAAGGAAACTGAATTTGGCACAAGTCTAACCGAGGTTGAAGATGACACCTCAGAAGATCAGATGATTGAAGACATGAGCCATGAGGAGATGCTGCAGGAGCCACAAGACAAAACAGAGATGCAGAAACACTTGGTAGAAGTTGAAGAAGATATCCAAGATTCTCAGGTGGAAGAAGAACCTACTGAGGACTTTGAAGAAGACCTAGATCATACATACATTTCAGAAAATGAAAGTTAATTTACTAAGAGGATAGCAGTACACAATAAAAGACTTTCTGAGGACTTTAAATGATCCAGTTACCCTGATGAATGATGTGAAACTTCACATGTATTGAAAAGTTCCTCAGTCTTACTTTGTACTTGGAAGTGAACTTTGAACCTAGcagcaatgtttttttgtttgtttttttgtagctATTCTCTCTCTTCAAGTCTTGAATTGCTCCATTTACACTGAAATGTAGAGTTGGGATTGTTCAACTAGATTACAAATTTAAAGACAGCAATTTTTTCATACAGTGGTTTTCCAGCTAGCTAACCTCAGGAGTGTCActtaaataaaactgcttttttatgtttttacta

Function

symbol description
zgc:66479 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including fin; median fin fold; myotome; pectoral fin bud; and periderm.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031030-10 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including fin; median fin fold; myotome; pectoral fin bud; and periderm.

Ensembl:

ensembl_id ENSDARG00000008732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064382 True 2372 mRNA 0.44 4 46736251 46742455

Neighbor

gene id symbol gene type direction distance location
XLOC_033128 tarbp2 coding downstream 871 46725540 ~ 46735380 (-)
XLOC_033127 ptgis coding downstream 146525 46568119 ~ 46589726 (-)
XLOC_033126 kcnb1 coding downstream 170785 46507609 ~ 46565466 (-)
XLOC_033125 rdh20 coding downstream 261768 46458416 ~ 46474483 (-)
XLOC_033124 camk1a coding downstream 332776 46353910 ~ 46403475 (-)
XLOC_033130 igfn1.2 coding upstream 791 46743246 ~ 46768040 (-)
XLOC_033131 igfn1.4 coding upstream 29199 46771654 ~ 46790042 (-)
XLOC_033132 igfn1.3 coding upstream 101137 46843592 ~ 46875310 (-)
XLOC_033133 igfn1.1 coding upstream 136434 46878889 ~ 46941245 (-)
XLOC_033134 grm4 coding upstream 239031 46981486 ~ 47246948 (-)
XLOC_033123 CU041346.1 non-coding downstream 426240 46294361 ~ 46310011 (-)
XLOC_033121 BX005101.1 non-coding downstream 484311 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding downstream 508019 46228117 ~ 46228232 (-)
XLOC_033118 NA non-coding downstream 807076 45923942 ~ 45929175 (-)
XLOC_033111 NA non-coding downstream 2733709 43979711 ~ 44002542 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 413847 47156302 ~ 47156416 (-)
XLOC_033138 AL929512.1 non-coding upstream 860144 47602599 ~ 47602715 (-)
XLOC_033141 NA non-coding upstream 1236850 47979305 ~ 48061659 (-)
XLOC_033145 CU469362.1 non-coding upstream 1637790 48380245 ~ 48381223 (-)
XLOC_033148 CU137649.1 non-coding upstream 1869579 48612034 ~ 48612150 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_12975913_12979472 NA coding CI01000340 null 12975886 ~ 12979472 (-)