XLOC_033134 (grm4)


Basic Information

Item Value
gene id XLOC_033134
gene name grm4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46981486 ~ 47246948 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064390
CATGGGGAAAATGATTGGATGGAGCAATCATCACTGTCAGGGCTCAGCTTTAGTTTTTCTCTACCTCTTCATGACTGCTTTGGCTGCACGGACCAAAGGTCCAGGCCACACACATCTAAACTCTATCCGAATTGATGGGGACATTTCATTGGGCGGCCTGTTTCCGGTTCACGCTCGGGGTCACGAGGGCAAAGCCTGTGGTGAGTTaaaaaaggaaaaggggattcATCGTCTGGAAGCTATGCTCTTTGCTCTGGACCGCATCAACAATGACCACGAACTGCTCCCTAATATCACGCTGGGTGCCCGCATTCTGGACACGTGCTCACGGGACACTCACGCTCTGGAGCAGTCTCTCACTTTTGTCCAGGCACTCATCGAAAAGGACGGCACGGATGTGAAGTGCCAAGGTGGAGGATCGCCCATCATTACCAAGCCAGAAAGGGTGGTTGGTGTCATTGGAGCATCGTCCAGCTCTGTGTCCATAATGGTGGCTAATATCCTCCGTCTGTTTAAGATTCCCCAGGTGAGTTATGCCTCCACGGCTCCTGAGCTGAGCGACAACACCCGTTATGACTACTTCTCCCGAGTGGTACCACCGGACACCTACCAGGCACAGGCGATGGTGGATATTGTCAGGGACATGCGCTGGAATTATGTCTCCACTGTGGCGTCGGAGGGGAATTACGGAGAGAGTGGAGTGGACGCCTTCATCCAGAAATCTCGGGAAGAGGGAAGTGTGTGTATCTCACAGTCGGTGAAAATCCCCCGTGAGCCAAAACCAGAAGAATTTGATAAGATAATCAAAAGACTAGGAGAAAATCCGAACGCAAGGGTTGTTATTATATTTGCAAATGAAGACGATATAAGGCGGCTACTGCAGGCGGCGAAAAAAGCCAATCAGACTGGTCACTTCCTGTGGGTGGGGTCTGATAGCTGGGGCTCGAAGATTTCGCCAGTGCTGAACCAGGAGGAGATGGCGGAGGGAGCTGTCACCATCCTACCCAAACGCCAGTCCATCAGAGGCTTTGATCGCTACTTCACCAGCCGCACGCTGGAGAACAACCGGAGGAATATCTGGTTTGCCGAGTTCTGGGAGAACAATTTCAACTGCAAGCTCAGCCGCCATGCCTTGAAGAAGGGATCTGGCATTAAGAAATGCACAAATCAAGAGAGGATCGGAAAAGACTCGACCTACGAGCAGGAAGGAAAGGTAATGTTCGTGATTGACGCAGTCTATGCCATGGCTCATGCCCTCCACAACATGCACAAAGAACTGTGTCCTGGCAAAGTGGGACTCTGCTCAAAAATGGACCCCGTCGATGGAGCCCAGCTGCTCAAGAAAATCCGCGATGTCAAGATAGCAGGCATAGGTGGCAATCCGGTGCAGTTTAATGAGAATGGAGATGCCCCAGGCCGATACGAGATCTATCAGTACCAAATAAAGAACAAAACAGCCGAATATAAAATCATAGGCCATTGGACTGACCAACTTTACCTGAATGTGCGGGCGATGCAGTGGCCAGGTGGAGGGAGGCAGGTGCCGACTTCCATCTGTAGTCAACCCTGCAAACCCGGATGGCGCAAGAAGATAGTTAAGGGCATGTCCTGCTGCTGGCACTGTGAACGCTGCGACGGCTACCAGTATCAGGCTGACCTCCACACCTGCAAGATGTGCCGCTTCGATTTGAGACCTAACAAGAACCACACAGGCTGCCAGCCTATACCTATTGTGAAGCTGGAGTGGAGCTCGCCATGGGCCGTCATACCTGTCCTAATCGCCATTCTTGGCATCATAGCCACGCTTTTCGTGGTGGTGACCTTCATCCGCTATAATGACACGCCGATTGTCAAGGCATCTGGCCGAGAGCTCAGCTACGTACTGCTTACGGGAATCTTTTTGTGTTACGCCACCACTTTCCTGATGATCTCCACTCCAGATGTAGGGATCTGCTCATTGCGGCGGATTTTCCTGGGGCTCGGAATGAGCATCAGCTACGCTGCGCTGCTCACCAAAACCAATCGGATTTATCGTATTTTTGAGCAGGGGAAAATGACGGTGAGCGCGCCACGCTTTATCAGTCCGGCTTCGCAGCTGATAATCACCTTCAGCTTGATTTCCGTTCAGCTCCTGGGGGTGTGCATCTGGTTCGCAGTAGACCCTTCGCAAGCTCTCATTGACTATGAGGACCAGCGCACCATAGACCCAGAGATGGCACGCGGAGTCCTAAAGTGCGACATTTCAGACTTGTCGCTCATCTGCCTGCTGGGATACAGCATGTTGCTGATGGTGACGTGTACGGTGTACGCCATCAAGACGCGAGGGGTTCCCGAGACCTTCAATGAGGCCAAGCCCATCGGGTTCACCATGTACACCACCTGCATCATCTGGCTCGCTTTCATCCCCATTTTCTTCGGGACATCGCAGTCAACGGAAAAGATGTACATACAAACGACCACGCTGACCATATCGGTCAGTCTGAGCGCATCTGTGTCTCTCGGGATGCTCTACATGCCCAAAGTCTACGTGGTGCTCTTCCACCCGGAGCAGAATGTGGCCAAACGCAGCACTCGCAGTCTGAAAGCTGTGGTCACTGCCGCCACCATGTCTAACAAGTTCAACCCCAAAGCCAGCCTGCGGCCCAATGGAGAAGCCAAGTCGGAGTTGTGTGAGAACCTGGAGACTCAGGGACTCAGCCCTAAACAAACGTACATCAGCTACAGCAACCATGCAATCTAGATAAGTGATAAAAGGCCACTACCGAATCCCAGAAGTGACCCCTGGAAGACAGCATTTCAAGATAAATCACTCTCACGTTATGTCACGTCTGGAAGTGAGATAGCGGACGCTTGGAGGAAAGCCCTACAGACATGTTTCCATTAATGAAGCTTTTGGTGAAGCCACGCGGGGAGCATCTGGAGAGGCCGAGACTGTAGAGACGGTGATGCTGGAATGACGTTCTGTCAACTCGGACTATTCCATTACAGCTTGCTCTATCTATTCCAGATGTCATTGTTCAAAGTGATACACACTAATTAAGGACAACATGTCAGTGTCTGCTGTTTCATCGACGCTAACACTATGTGgtggc

Function

symbol description
grm4 Predicted to enable adenylate cyclase inhibiting G protein-coupled glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; cranial ganglion; motor neurons; and retinal neural layer. Orthologous to human GRM4 (glutamate metabotropic receptor 4).

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007216 G protein-coupled glutamate receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001642 group III metabotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko04072 Phospholipase D signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04742 Taste transduction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-030131-5781 Predicted to enable adenylate cyclase inhibiting G protein-coupled glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; cranial ganglion; motor neurons; and retinal neural layer. Orthologous to human GRM4 (glutamate metabotropic receptor 4).

Ensembl:

ensembl_id ENSDARG00000040156

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064390 True 3092 mRNA 0.52 10 46981486 47246948

Neighbor

gene id symbol gene type direction distance location
XLOC_033133 igfn1.1 coding downstream 40241 46878889 ~ 46941245 (-)
XLOC_033132 igfn1.3 coding downstream 106176 46843592 ~ 46875310 (-)
XLOC_033131 igfn1.4 coding downstream 191444 46771654 ~ 46790042 (-)
XLOC_033130 igfn1.2 coding downstream 213446 46743246 ~ 46768040 (-)
XLOC_033129 zgc:66479 coding downstream 239031 46736251 ~ 46742455 (-)
XLOC_033136 im:7151449 coding upstream 237136 47484084 ~ 47506351 (-)
XLOC_033137 magi3b coding upstream 282933 47529881 ~ 47796989 (-)
XLOC_033138 AL929512.1 coding upstream 355651 47602599 ~ 47602715 (-)
XLOC_033139 lrig2 coding upstream 562807 47809755 ~ 47840465 (-)
XLOC_033140 RAP1GAP coding upstream 622449 47869397 ~ 47953829 (-)
XLOC_033123 CU041346.1 non-coding downstream 671475 46294361 ~ 46310011 (-)
XLOC_033121 BX005101.1 non-coding downstream 729546 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding downstream 753254 46228117 ~ 46228232 (-)
XLOC_033118 NA non-coding downstream 1052311 45923942 ~ 45929175 (-)
XLOC_033111 NA non-coding downstream 2978944 43979711 ~ 44002542 (-)
XLOC_033141 NA non-coding upstream 732357 47979305 ~ 48061659 (-)
XLOC_033145 CU469362.1 non-coding upstream 1133297 48380245 ~ 48381223 (-)
XLOC_033148 CU137649.1 non-coding upstream 1365086 48612034 ~ 48612150 (-)
XLOC_033149 NA non-coding upstream 1667920 48914868 ~ 48949515 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_13123870_13230976 GRM4, GRM7 coding CI01000340 null 13123870 ~ 13230976 (-)