XLOC_033130 (igfn1.2)


Basic Information

Item Value
gene id XLOC_033130
gene name igfn1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46743246 ~ 46768040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064383
TTGCTGTTGTAAAGCTCACCAAAATAACAGATTTAATGTGACAGCTAATAAGACTGTAGTGCTTGAGAGGTTTCAATTTGGCCCACTGCTGTTTTATTGCTGAACAAAATAGAGAGACTGCAATAAATTGTGGGAGTCGAACACGGTTGTGTTTGACAGAGCAAGTTAGCTACACGTGAAGacactgcaACATTTACAAATTGTGCACAAAAGGCAAATCTAGCATTTTGAAGATGCCAAATCCAGCAGGAAAAACAGGCGTGGCAATTAGGAAGAGATCCAAAGTGCCTGGTGTTATGGTCACACAGTATGTCGAGGAACTTCCGCCTGGATGTACTACGCCTGATTTCATCAGAAAACCCATAGCATTAACTATTCAGGAAGGCAAACTGGCCTTTTTCAAAGCTGTTGTTAATGGATGTCCAGTTCCAGAAGTTACATGGGGACGAAACAAGGAAGACATCTCTAATTCAACCAAATACGTTACACGATTTGATGATAAGAATGAAGAATATATTTTGGAGATACCAAATGTAGATTCAGATCAAGCAGACACATACAAGTGTTTTGCTATAAATCCGTTTGGAAAAGCTATTTGCACTGCTGCACTGAATGTCATTGAGGTTGGATTCAAGAAAAGGAAGCCagCCCCCAAAAGTGACCCAGATGAGTTCCGAAAAATGCTGAAGAAAACGGTTGTCAAGAGGAAACAAGAACAATGTAAAGAGGGGGAAATTGATCCAAGGTTTTGGGAGGTGTTGCTGAGCGCTGCCAGGAAAGATTATGAACGTATTTGTCACGAATATGGAGTCACTGACTTCAGGTGGATGCTGAGAAAACTAAACCAGAAGAGGAAGGAAAGAGAGGCAGAGCAGTCCAAGTATGTGGAGAAAGTCCACAGCATGAAACAGATTGAGGTGAAAACTGACGGCACAGCAGAATTTGAGCTAGATATGAAGCTAAAGGATCCTAACAGCAAAATCTTACTCTACAAAGACGGGGAAATGCTTGACTATGGAGATGGAACGGATGATACTGCAAAACATAATATGCAACAATTTGGTGAAACATATTTGTTCAGCATTAGAGATGTTGGCCCAGAGGATGCTGGCTTGTATCAAGTGGATGTAGAAGATGCAAACATGTTCTCAACTTCTCTAGCATTGCCTGACGTGGAGTTTAGCAGGACTCTCAAAGACACGAAAGTGGCAGAAGGGCAGGATGCAGTGTTTGAGTGTGCCTTATTGGACCCTGTCCCACAAATCACCTGGTGCGTCAATGATGTCTCTGTAGAGAATGGAGATAAATATGTTATCACAGTGTCGGAAGACCAGCAAGTGCACAAACTAGCAGTGAAAAACTGCACAAAAGATGACAAGGGAGTCTATTCGGCTATTGCTGGTCTCAGATCAAGCCAGGGGACTTTGGATGTGGAAGCCAGTGGTACAAGTGACGCAGATGAACTTGCAAAACATTTAGCTGAGGATAAAGCCAGACTGCAGAGGGAAAAGAATGAAGCAGCTAGGAGGGCACAGGCTGAAAAGGATGAAGCAGCCAGGAGGGCACAGGCAGAGCGAGATGAAGCGGCTAGAAAGGCCAAGAAAGAGCAAGATGATGCCAGGAGAGCCCAAGCTGAAAGAGATGAAGCCGCCAGGAGGGCCAAGGCAGACCAAGATAAAGCCTCCAGGAAGGCAAAGGCTGACCAGGATGAAGCTGCCAGGAAGGCTCAAGAAGAGCAAGATGAGGCAGCCAAGAGGTCGCAAGCTGAAAGAGATGAAGCGGCCCGGAGAGCTCAGGCTGAAAGAGATGAGGCAGCCAGGAGGGCACATGCCGACCGAGAAGCGGCTGAAAAAAGGGCAGCCATGATGGCAAAGAAAGAAGAACAAAATGGCAGTGGAGGATCTATCCTGGTAGATGTCGATGAAGGTGATGGATCAGAGATGAACAATGGAGGAGATGGAACTAGGAAAGATGGAAAAGGAGATGGTTTAGATGTAGATGGTTCAAGAGGAGATGGATCAAGTGAGAAGCGCACAAAACGTGCAAGAGACAGTGAATTGGTTCCTAACTGCATCACAGAACATGGAGTCCACTTTCTGAAAGGCTTGTCAGATGCTGTTGTAAACATTGGAGAATCAGCAGAGTTAGGGTGCAAACTTAGCAGTGAAGATAGCACTGGATTATGGTACAAAGATGGCAAAAAGCTGGTGTCTGAGGATGGGATTACAGTTGTTAAAGATGGGGCTCACCACAAACTAATCATCCATAAATGCCAAGAAGGAGATGCTGGGAAATACAAGTTTGAGGCTGAAGGACGTAAATCAGAGGCTTCATTAACTGTTGAAGATCCACCCAAAATTGATGCAGATGCCTTGGGTAAATTCTCAGAACCCATTGTTGTGAAAGCAGGAGAAAATGCTTCCTTCAAGCTGCCATTTTCAGGAAAAGAGCCATTCAAGATCCAGTGGTTTAAAGGGGACGAAGAGCTGCTGGAGGGTCACGGAGTCAGGATTGAAAAGTCTTCAGCTCACAGTCGCGTACTTCTTACTAAGTGTCAGCGCAAAGACACCGGAGAGATCAAGATCAAAGTCAAAAATGAATTTGCCACCATGGAAGCAGCATCAAAACTCATTGTACTTGaCAGGCCAAGTCCACCACAAGGACCTGTGGAAATTGTAGAAAGCTCCTTGTCTGCTATCGAGTTTAAATGGAGATCCCCGAAGGATGATGGGGGTTGCCCTGTCACTAATTACAACCTGGAGCGTCAACAGCTGGGACGGAACACCTGGACTAAAATTGGAGACATTCCTGGACAGCCTGTCTACAGAGACACGAACACTGAACGTGGTCGAAAGTACTGCTACAGAATCCGCGCAAAAAACTCAGAGGGCCTCAGTGACATCATGACAACTAATGACATAGCTGCGGGCACTTTGGCATTCCCTGGCTCTCCTGCTCCTCCTAAAGTGGTCAGTGCCTTTAAAGACTGTGTTAATTTGGCCTGGCTTCCTCCCTCCAACACTGTAGGAGGCAGTATCATTGGCTACAATGTGGAAAAACGAAAAAAGGGCAGCAATTTTTGGAGTCAAGCAAACCTAAAAGATGAACCAATCAGAGagAAGAAGTACGCAGTAAAAGATGTAATGGAAGGTGTAGAGTACGAGTTCAGAGTTTCTGCTGTTAACACATGTGGCCCTGGAGAACCAAGCGGACCCTCTGAATGCGTGATTGCAAGAGACCCCAAAAAGCCTCCCGGTAAGGTCAAAGAACTTAAAATTAGTGGATCAAGCTACACCAGCCTGTCTCTGTCCTGGACTAAACCCACAGAAGTCAAAGGTGAGGAAGATGAAGCAAAGGGCTATTTTGTGGAAATCAGGCCTGCAGAGCAACTGGAGTGGAGCCGCTGCAATACAAATGCTGTGAATCAGACCTCCTTTACTGTTGTGGGATTGAAGTCAATGGCTATGTATTGGGTTCAAGTGATTGCCACCAATGAAGGAGGAGAGGGGCTTCCGCAGAGCTTTGACAATTATATCATCGCCATGCCTCCTCCGGtaaagcCAAAGTTcactgacaaaaaaatgaaaagcttTATGGTTGTTAAAGCTGGAAACACTGTTCGTGTCAGTGTCAGTTTTGAGgCCTCTCCATTACCAGACATTACATGGCTAAAAGACGGTTTTCCTGTAGGCAAACGTGTGACGATTGCTAATTTTGAAAAAGGTTCTCAGCTATTTATTTACACCTCAGAGCTGTCTGACACTGGCATCTATACAGTCAATGTGAAGAACACGGTGGGCCAGGACACCTTCGCTATTGAAATAAGAGTCACTGATGACCCCAAGCCTCCAGGTCCAGTAGAACTGGAACAAAATGTCCACGACACTGTGACTCTGTCATGGACTCCATCCCCTGATGAGAAACGAGACAATCATCTACATTACATGGTGATGAAGCGGGACTCTGTCAAGCAGACATGGCGCACAGTGGTCGATCGCTTGTTCAACAACAAATTCACAGTCATTAACATCTTGCCAGGACGAGAGTACACTTTCAGAGTGTTTGCCAAGAATGATATAGGTCTCTCGGAGCCATCAGTGTCTCCTGTTTGGGGAACCACCAAAAAAAGAGaaaaacacacatacagCATGCCTGTATCAAAGACCATAGACTTCCAGGCAGCCCCCAGATTTATTGTCCCATTGAAACTCCATGCTGCTCCGCCGGGTTATGAGTGCCACATGAGCTGTGCTGTTACCGGCAACCCGACCCCACATATCACCTGGTACCACAACAACATCAGCCTCAACACAAACCCAAACTACTACATCACCAATGTGTGTGGGGTTTGTTCCCTGCTGATCCTGAGGGTTGAACGCAAAGACATTGGAGAGTACAAGGTTGTGGCCGAAAGCCCTCTTGGTCATGATGAGAGCGCCACCAAGCTCATAATCAAAGAGTGAAAAAGAATGAATGTCAAAGAACACAGCAgctgttttaaaatgcattctCAAAAGTGAAATAATAACTGATGTGATTTTAGGGAATAAATGTTATCACCTGTATGTATTAAAtattctctatctatctatctatctatctatctatctatctatctatctatctatctatctatc

Function

symbol description
igfn1.2 Orthologous to human IGFN1 (immunoglobulin like and fibronectin type III domain containing 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-789 Orthologous to human IGFN1 (immunoglobulin like and fibronectin type III domain containing 1).

Ensembl:

ensembl_id ENSDARG00000075926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064383 True 4637 mRNA 0.45 24 46743246 46768040

Neighbor

gene id symbol gene type direction distance location
XLOC_033129 zgc:66479 coding downstream 791 46736251 ~ 46742455 (-)
XLOC_033128 tarbp2 coding downstream 7866 46725540 ~ 46735380 (-)
XLOC_033127 ptgis coding downstream 153520 46568119 ~ 46589726 (-)
XLOC_033126 kcnb1 coding downstream 177780 46507609 ~ 46565466 (-)
XLOC_033125 rdh20 coding downstream 268763 46458416 ~ 46474483 (-)
XLOC_033131 igfn1.4 coding upstream 3614 46771654 ~ 46790042 (-)
XLOC_033132 igfn1.3 coding upstream 75552 46843592 ~ 46875310 (-)
XLOC_033133 igfn1.1 coding upstream 110849 46878889 ~ 46941245 (-)
XLOC_033134 grm4 coding upstream 213446 46981486 ~ 47246948 (-)
XLOC_033135 CABZ01055240.1 coding upstream 388262 47156302 ~ 47156416 (-)
XLOC_033123 CU041346.1 non-coding downstream 433235 46294361 ~ 46310011 (-)
XLOC_033121 BX005101.1 non-coding downstream 491306 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding downstream 515014 46228117 ~ 46228232 (-)
XLOC_033118 NA non-coding downstream 814071 45923942 ~ 45929175 (-)
XLOC_033111 NA non-coding downstream 2740704 43979711 ~ 44002542 (-)
XLOC_033138 AL929512.1 non-coding upstream 834559 47602599 ~ 47602715 (-)
XLOC_033141 NA non-coding upstream 1211265 47979305 ~ 48061659 (-)
XLOC_033145 CU469362.1 non-coding upstream 1612205 48380245 ~ 48381223 (-)
XLOC_033148 CU137649.1 non-coding upstream 1843994 48612034 ~ 48612150 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_12981561_12992400 NA coding CI01000340 null 12981347 ~ 12992400 (-)