LOC110494924 (LOC106592628)


Basic Information

Item Value
gene id LOC110494924
gene name LOC106592628
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16819145 ~ 16836715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949152.1
CATCTGGCACctagatgcagtgcctcagaccgctcgGGAGCCCCGAGTTAAAGAGGGAAATGTTTTAACTGGCACAGAAACACGAACGCATAGACTCCAAGCGTCTACTTGGCAGACAGGGAcgaagaagaaagagaagaacgTGTGATAAAGAAGATGATAAATGAGCTCTGGTGGAGGTTTAGAGTACAGCTGAACCATTCTGACAGAGAGTAGCACGCTGCAGACTTGTCTTAGTAATGGATGTGTACTtcggggaggggtggagggatggagggagtcatcaagagaggagagaaagggaggatgagTTATAATCagcgaggagggagagaagacagggaggggaAAGCAAGCGATCTACAGCGtgtttaggagagagagaggctgagtaaAGTTTCTTACCCGGTTACAACATTTTCCTCGCGCACAGCTGTTCCTCAACACCAATACATTCGCGAGCATCGCTAGGAGGAACTCAAGgtgTGGTCATCATGTTGGGGGTGTGTCTGTCCGTCCTATTGCTCCTCCCCCTGGCCTCGTCCATCCCCTCCCCCTCCAAACCTCCCCCAAGACTATGCAGACGATGCTGCGACCCCCTGCAGCCCCCAGAATCCTCTGCTGCACACCCTGCCCACCACGCCGCCGCCACGCCAGAGGTCCACACCTACATCAACATGACCATACTCAAAGGTGATAAAGGTGACAGAGGAGATAAAGGCATGCCAGGGAAAAATGGTAAAGAAGGTCCGCAAGGTTACCGGGGTCCCATGGGTCCTCAAGGGACTAAGGGCCAGGCGGGCGCCCCGGGAGATGCCTGTAAGACACAgcactcctccttctctgtaGGGAGACGTAAATCCCTCCACAGTATAGACTACTACCAGGCCCTGGTGTTTGACACGGTGTTCATCAACCTCTACGAGCACTTCAACATGTTCAAAGGTAAATTCTACTGCTTCGTCCCAGGTATCTACTTCTTCAACGTGAACATCCACACGTGGAACTTCAAGGAGACCTACCTCCACCTGATGCACAACGATAAGGAGCAGGTGATCCTGTACGCCCAGCCCAGTGAGAGGTCCATCATGCAGAGTCAGAGTGTGATGATGGACCTGGCGCTGAACGACGAGGTCTGGGTCAGGCTCtacaagagggagagggagaacgcCGTCTATAGTGATGACGTGGACGTCTATATTACCTTTAATGGATACCTGGTGGCGCCTAGTGTCCAGTGATcagagtggaggaagagggggagggggaggaaactCTGtgttggattttggttgttttatCATGCCTAAAGTTCAGTGATGAAGaaggaggaaagaagagagagagggaacttgCGCCAGTGTTGGATTTTTGATTTTGCTTGTGCCTATATTGCCTTCAGTGCTCACCAAATTCAAATGTAATCTGGTTGGATTTTGGTTGTCCGTTTGCAGTGCCTTCAGTGCTCACCAAATGGACATTTTAGTTGTTCCTTTGTAGTGCCTTCAGTTCTCACCAAATGTAAACTCTGGGTTAATTATGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTGTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGACACTCTGGGTTGGATTTTGTTTGTACTTCCGTTGCTCCTAAAGCAGCCAATTGATACAAATgatctgcacacacattttcctCTGCCTCACAATGTATTCCTCTCAGGTACTTTGAATGGGGAGGATTGTGGGCAGTGTTGTGCAGTGTTGCAGTGTTGTGTAGTCCCAGTGAGAAAAATTGGTTGAAATTACATAACTTTTTAAGCTTTTCAACGTCTTTTCAATGTCTTTTGCTCTTCGGGTGGTTTTGGGACTAGACTTGAATGGACCCTGCGTTGAACTGTTGCTAAGGTGACCTCGAGGAAAGCTGTAGAAGTGAAAAAGAAGAAAATGGGAGCCATATTAAATGAATATATAGAGATTGTTGAGTAAGTAATGCAAGATTGTATTGATATATATATTGATAACTCAGTGTTACGTGTTTTTATAGAGATTTACTTTAAGCTGCAGAGCAGCTTGTAACATGTACATATTTGTACAGATTTTTGTTACCTAAAACGTTTTATCACTAGTCTGGGTGCCAGTTGGTCTTTGCTTTAGCTGAACTGTTGTTGTTGTCCCGTCCTGAACACAATACGCTACTGTTGCTGAATGCAGTTTGAAAAGTTCTGCATCCAGGCTGGGCTTACCCTAACCCGATACCACCAAAACCTGAAAGTACTGAATTCCATTGTATCaatacaacacatactgtatcagaACAATATAAACCAAACAATCATTTGTAAAAACCCATTCAAACTAGAAGCCCATTCTAAACCAGACCTTCTAGAACCATTACTCCCCGTTGTCAGTTGAGCAGGTTGAACAGATGCATTCTATCTTTCACCTAGAGGTTAAAGGTCAAACCCTGACCCCTGCCTGTTTCCCACCGTTAGAGTACACAACCCCTCATTACTGTCAAGATTTGAATATGTCCTAGTATTGCaatacatggggaatagggtgccaaatgtagtgcactatattgggcaTATAAAGTGTGTGCTAGTATGtcatagtagtgtactatgtagggaatatgggtGCAGTCTGGGATTATCAGTTTTGTTTGACAGCTCCAATGGAAAACCCAACTAAAAGCTAAAGagaggaaaaacaacaacaacatgtgtgGTTTGGATGGTGATGGTTGAATTGGTTGCCAGATGGACGACCATATCTCTCCTATTACTGCTAATTCTGTCCTCAGTCCACAGGGACTGGGGCTAAACTGGAGATAGAGAGACCAACTGGTGTATTAGGCCATGACTAGATAGCGTTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTCATTCCCTAGTCAATAGCTCTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAGTTCCCTAGGCAATAGCTATGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCATAGTCAATAGCCCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATGTAATAGCGTACCATAGGGATGTACTTCCTATGGCTGTTGTACTGTAAGTACCTATTTCCTGGATATCACTCAAAACCAAGAGCAGAAGTTGACAAAGTTGGTTTGCTGTACCCAGGAGGCAGAACAGCAGAAAGCATTGTGGGTTGGGTTATTAGTATTTACCGTGTGCCCCAAAACACAGCCATTTATAACCTCGCTCAAACAATGGCTCTGTTTCCTACGCACCTCTACAAATGCAGATTGCACTTTCAAGGAGTTCTCTGAGAGTTGTTGGTAGACGGCCTCTTTaaaactagcctggtcccagatcagtttgtgctgtttggcatgacaatgaccattgcgagacagtacaaacagatctggaaccaggctacagTAAAAGTGAAAAGCAGCAGAACTCCTGTTCCTTCCTGGATGCATTTTATTAGTTCTATTAGACGGTTGTGTAGTTCTCTTGTATTTAGCAGCACTTAGAGCCTTTTATACCCTCATTAAAGACATGGACCCAGTTCATAACAGTAACGACTCCATCTGAGGTAAACAGTAAAGTAGCTTTGAATCGCCCCACTATCCTATAAACGCCATGCTCTATAAAATGAGCCATAAAGTAAGTTGTGGTGTTATGTTACCTGTGAAAGAGTGTTGATAAAACTCCTGCAGTTACTGCTGTTAGAGTTCAAGGTTTAGATGGGAGGGCGGCTGGGAGCAGTTggtatgacaggttatgacaggcTATGACAGGTTATGACGTATATATCTCATGCTCATGGCATGTTTACAAGACAGGTTTCTGGAGAAAGGCTCAAGAGGAGAGTTAGTGAGAGTTTTCAATGACATCAATGACGTCCGATTTCCCCCTGCGTCAAAGTCAGCCACAGCTTTCTCTCTAACaccctcgctatctctctctctcttgctctctctcatctctgtctctctctccctctaatgctctactctctctctcttgctctctctctcctctctccctctcttgctcttcctctcgctctctctctcatctttccttctccctctctctccatctctgtctctgtttctccctgaccTCCCTCTTttgctctcatcctctctctctctctctctctctctcatcctctgtccgtctctctctctctctctctctgggctgtttTTCTTTAAGTCAGTAACAGGAAGCTAATGACAACCAGACCTCTGACTGACCGAACTACCctgagagaaggggaaagagggggagaagaaggagacagagagggagaggagaatagTAGAGAGGAAAGGAAAATAGGGAGCGAAAAGGGGtaaaaggagagggaaagaagaaggaggatgagagaaag
>TU1630486
ACCTAAAACGTTTTATCACTAGTCTGGGTGCCAGTTGGTCTTTGCTTTAGCTGAACTGTTGTTGTTGTCCCGTCCTGAACACAATACGCTACTGTTGCTGAATGCAGTTTGAAAAGTTCTGCATCCAGGCTGGGCTTACCCTAACCCGATACCACCAAAACCTGAAAGTACTGAATTCCATTGTATCaatacaacacatactgtatcagaACAATATAAACCAAACAATCATTTGTAAAAACCCATTCAAACTAGAAGCCCATTCTAAACCAGACCTTCTAGAACCATTACTCCCCGTTGTCAGTTGAGCAGGTTGAACAGATGCATTCTATCTTTCACCTAGAGGTTAAAGGTCAAACCCTGACCCCTGCCTGTTTCCCACCGTTAGAGTACACAACCCCTCATTACTGTCAAGATTTGAATATGTCCTAGTATTGCaatacatggggaatagggtgccaaatgtagtgcactatattgggcaTATAAAGTGTGTGCTAGTATGtcatagtagtgtactatgtagggaatatgggtGCAGTCTGGGATTATCAGTTTTGTTTGACAGCTCCAATGGAAAACCCAACTAAAAGCTAAAGagaggaaaaacaacaacaacatgtgtgGTTTGGATGGTGATGGTTGAATTGGTTGCCAGATGGACGACCATATCTCTCCTATTACTGCTAATTCTGTCCTCAGTCCACAGGGACTGGGGCTAAACTGGAGATAGAGAGACCAACTGGTGTATTAGGCCATGACTAGATAGCGTTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTCATTCCCTAGTCAATAGCTCTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAGTTCCCTAGGCAATAGCTATGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCATAGTCAATAGCCCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATGTAATAGCGTACCATAGGGATGTACTTCCTATGGCTGTTGTACTGTAAGTACCTATTTCCTGGATATCACTCAAAACCAAGAGCAGAAGTTGACAAAGTTGGTTTGCTGTACCCAGGAGGCAGAACAGCAGAAAGCATTGTGGGTTGGGTTATTAGTATTTACCGTGTGCCCCAAAACACAGCCATTTATAACCTCGCTCAAACAATGGCTCTGTTTCCTACGCACCTCTACAAATGCAGATTGCACTTTCAAGGAGTTCTCTGAGAGTTGTTGGTAGACGGCCTCTTTaaaactagcctggtcccagatcagtttgtgctgtttggcatgacaatgaccattgcgagacagtacaaacagatctggaaccaggctacagTAAAAGTGAAAAGCAGCAGAACTCCTGTTCCTTCCTGGATGCATTTTATTAGTTCTATTAGACGGTTGTGTAGTTCTCTTGTATTTAGCAGCACTTAGAGCCTTTTATACCCTCATTAAAGACATGGACCCAGTTCATAACAGTAACGACTCCATCTGAGGTAAACAGTAAAGTAGCTTTGAATCGCCCCACTATCCTATAAACGCCATGCTCTATAAAATGAGCCATAAAGTAAGTTGTGGTGTTATGTTACCTGTGAAAGAGTGTTGATAAAACTCCTGCAGTTACTGCTGTTAGAGTTCAAGGTTTAGATGGGAGGGCGGCTGGGAGCAGTTggtatgacaggttatgacaggcTATGACAGGTTATGACGTATATATCTCATGCTCATGGCATGTTTACAAGACAGGTTTCTGGAGAAAGGCTCAAGAGGAGAGTTAGTGAGAGTTTTCAATGACATCAATGACGTCCGATTTCCCCCTGCGTCAAAGTCAGCCACAGCTTTCTCTCTAACaccctcgctatctctctctctcttgctctctctcatctctgtctctctctccctctaatgctctactctctctctcttgctctctctctcctctctccctctcttgctcttcctctcgctctctctctcatctttccttctccctctctctccatctctgtctctgtttctccctgaccTCCCTCTTttgctctcatcctctctctctctctctctctctctcatcctctgtccgtctctctctctctctctctctgggctgtttTTCTTTAAGTCAGTAACAGGAAGCTAATGACAACCAGACCTCTGACTGACCGAACTACCctgagagaaggggaaagagggggagaagaaggagacagagagggagaggagaatagTAGAGAGGAAAGGAAAATAGGGAGCGAAAAGGGGtaaaaggagagggaaagaagaaggaggatgagagaaagggagagagggaaagaaggaggatgagagaaaaggagagaaggaaagaaggaggatgagagaaagggagagaaggaaagaatgaggatgagagaaaaggagagggaaagaaggaggatgagagaaagggagagagggaaagaaggaggatgagagaaaaggagagaaggaaagaaggaggatgagagaaagggagagaaggaaagaatgaggatgagagaaaaggagagggaaagaaggaggatgagagaaaaggagagaaggaaagaaggaggatgagagaaaaggagagaaggaaagaaggaggatgagagaaaaggagagaaggaaagaaggaggataagagaaagggagagaggggtgaatggaagagagagagaggagactgcattctcatgagagagaaggagagagggaaatagaaagATAGAAAGGGTCAGGCAGAAAGTCTCTGAGAatgggagagtggggtcacgaccCCTCAAGTTAGGACATCTCTAAGATCGGCCCTTTCTAGTGTAAACCAATGAACTAACTAActaatgtaaacattacagtagagtagcaTGAACTGAGGAAGAGCTGCCGACTAAATCAACGTTGTTTTTCCTGTGGGAACATTCTCTGGCCTAAAGTAAACCAGATATATGTAAATGTGATCCTCCTTTCAGACACAGTATAATAGTAAGAGCTGCATGATAACAATGACTAACGTACAGTAACAGCAGCACATCTTATTGTGTGGGAGGAGAAAGGACCTGGGGTTTTCTAAAGCTTCTCCCCCCTGAGGTTGAGCTGAGTGAAGCTTTCTtggctctccttctctctttgtgtgtttggCGTGcccgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgaggctttCTTGGCAGGCTTGTTGGATGTAGGGATTTTACCTACCGCGCTTAAGAGGCTGttgccaacacaaacacacacagagagggcctgaaaggagagagagagagcgagaggaaagaggagagagagagagagagagaggaaggactaGAAATAGAGGTTGAGTAATGGTATGCATGTATCAGGGACTTAATCACACAGGGTCAAAGGCAGGGGGTAACACAGCACTGGTTTCTACCTCCAACCAAGCTGTAGTGTTTGTCTATTCCCCTCACTGTGTTACACAGTATAAACCAGTTCCAGTTTGTTAAAGGGAAAGGCTGCCTACTCAGTGTATCGGAGGGACAGTTTGTAAAGCACAGCTGGTTTAATGGAAGGACCAGTTGTCAGTGTTCCAGGAGTTATACaggtgcagacacacacagacctccactatacactctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctgtctctctctctctctgtctctctgtgtctctgtctctctcaaccaTGGCTGATCTGTAACCTCACTGTCTGAGAGGGTCTCAGGGGGATGAAACACACTGGCCTCCACACGTGTACATGTATGAAACAGCCCCTATTTGACATAATATTACATAGACTATTCTACCTAATGACTGGATAATGACTTGAATTGGTGATGTCAGCAGGGGGTGAAGAGGAGACGTTGTTGCATTGTCCTTCCTAATGATGATTAAGGATAGGAATGGTTGAgggaaaactgatcctagatctgtacctaagggCAACTTCTATCTGGAGCCAACTTAAACAAGAGGGAGTCGAGGAGATTCTTAATGAATTATGGGTAATTAGAATATAGGCACAATTAGGAATATAATTATTTAGgtttttgattgattgattgatcacaCTAACGCTAGTAAACTGTTATAATCTCAAGGAATGATGTCGGTGAATTGGTGCTTTAAAAAAACGATGGGTGAGAAATTGTGTTTATAAGTACATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949152.1 False 4964 mRNA 0.45 4 16821231 16836715
TU1630486 True 4419 lncRNA 0.44 2 16819145 16823719

Neighbor

gene id symbol gene type direction distance location
LOC110494933 LOC106591120 coding downstream 79699 16736497 ~ 16741532 (-)
LOC110494948 LOC106564393 coding downstream 89842 16717096 ~ 16731389 (-)
LOC110494903 LOC106564394 coding downstream 109337 16706615 ~ 16711894 (-)
LOC110495074 LOC106564395 coding downstream 119403 16697311 ~ 16701828 (-)
LOC110508387 LOC106599573 coding downstream 146666 16564951 ~ 16674565 (-)
LOC110495067 LOC106590617 coding upstream 23675 16860390 ~ 16933566 (-)
LOC110494935 LOC106590780 coding upstream 102588 16939303 ~ 16968595 (-)
LOC110493425 LOC106594459 coding upstream 144018 16980733 ~ 16987774 (-)
LOC110495066 rayl coding upstream 252309 17089024 ~ 17108667 (-)
LOC110495065 LOC106564434 coding upstream 305348 17142063 ~ 17146929 (-)
G1424249 NA non-coding downstream 14689 16806172 ~ 16806542 (-)
G1424234 NA non-coding downstream 50223 16770437 ~ 16772957 (-)
G1424233 LOC106564390 non-coding downstream 59062 16761375 ~ 16762169 (-)
G1424204 yo84 non-coding downstream 95580 16725116 ~ 16725651 (-)
G1424196 NA non-coding downstream 105322 16715703 ~ 16715909 (-)
G1424224 NA non-coding upstream 6511 16843226 ~ 16843765 (-)
G1424226 NA non-coding upstream 7346 16844061 ~ 16845516 (-)
G1424223 NA non-coding upstream 9217 16845932 ~ 16850533 (-)
G1424225 NA non-coding upstream 15806 16852521 ~ 16854548 (-)
G1424274 NA non-coding upstream 64256 16900971 ~ 16901204 (-)
G1424038 LOC106591467 other downstream 406372 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 411103 16406731 ~ 16410128 (-)
G1424040 NA other downstream 450788 16369757 ~ 16370443 (-)
G1424227 NA other upstream 14036 16850751 ~ 16851486 (-)
G1424218 NA other upstream 18762 16855477 ~ 16938699 (-)
G1424547 NA other upstream 620214 17456929 ~ 17457504 (-)
G1425321 NA other upstream 1072350 17909065 ~ 17911376 (-)

Expression


Co-expression Network