LOC110495067 (LOC106590617)


Basic Information

Item Value
gene id LOC110495067
gene name LOC106590617
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16860390 ~ 16933566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949156.1
acccaccagagagagagaaatgaaaagTAAGGAAaccggggagagagagacgggtgtgTTGCCTGTCCTCTTCATATGAGCGGAAAGGCGTCATATTCCGTGCAGCTCGAGCGCTGTTGTTGGCCGGGGCTcacacgacagagagagagagagagagagagggggagagagaaggaagaggggcTGCTTTACAGATAACGGAACAGTGAAAGGAGAAAGCGCTAGCGACGAGTCATAACGTAAAAATCGGTGTAAAACCGGGTAAGACAACAAGCGCGCGTCCAGTTTCCCTCATCACTTCGATTCGAGCCAACTGGGATCGGGATGGATATATCTTCTTCTGCACCATTTGTCAGATCTCCCGCTAGAGAGGACCGTGCCTCACGCGCAGCAGCAGCACCCCCACCACCGAAATCGTTTTTTCTTCTCGGATGCTCCCATTAGATACAGAACAACGGTAGATATCGATTAGTGGATAGTATTCGAATGCAGCGCGCACTGCCCGGGATAACGGTAGATTGAACCTGCTGGCTGCCATCGACTGAACAAACGGAGACGTACCAACGGTACCACGGGATTCGTGGTCGTTCAACTATCATAGGCACTGCAGCCTAGCAGGCAGCCCCCTTCGTCGCAAGATACAGGGATAAACCGTAGGATACTAGCCTACACTCGCTCCCTGATGCAAAACACCGCCGCAGCGCAGCGTCGAGAAACTATGCAGCTGTTTGATAAGATACATATGTAACGGGGGAATTACGGGAGACCCTGACCGGGTTCTCTGTCTGATCTGCGCACCCAGGTTGATAACGGAGGCTCCGATAACGGGATTGGAATGGCATAGATTGCTTTTTTTCAACACGGTGACCGACGAACAGAACGGATACATATCTGACATGACTATCTGCATCTAGAGACCTCAAACACAGGCGATGGGATGAAAATGCGACGTCACAGAGTGTTCTTGCTGTGCACAGTGGGCCTGTGTGTCATCTCCTTCCTCCACTATTACAAGGCCCTACACTACGTATCCCTGCTCAAGGAGCTGTCGGCCCCGTACCCCAACATCAAGTCCTTCATCATGGTGACAGGCTTCttctggagggaggggggggccaCACCGTTAACGTCGGCTGCCTCGTCGTCTGACTTCGCCGCCTCGCAGGAGGAAGGACCCCCGCCCGCCCTCAGGCCCTCGGACACCAAGCCCCGGATAGTAGGGGCTATTGGCcctgggggtggaggaggaggtggggtggAGATGAGGCTGAGAGAGGAACCTGCTGCGCCCCAACCATGGGGTCAACCAGAGGAGGAGCCCAGACACAGGGACATGAATCCCAACGAGGAGCGTGAAGGTGAGGACCTCCACTTCAAGCCCTGGTACCCCAGCCACCCAGCCCACCCTGTCAGACCTTACGCCCCAGAGGAAAGGGCCTCGGCTGGGATCGATGACCAGGTGGTGCCCTCCAAGGCTCCATCCCCGGACCCCTTAGAAACCCTGGGCGACATCCACACCCGCACCCACCAGCTCCAGGACGACCCCACCTCCTACTTCGTCCGCACTAAAGCCGGAGCCCTCTGCTTCCGCCAGGGGACGGAGGTCGCCACCCCCAGGGATGACGCGGCACGACCCGGGGGGCCTACTGTGACTGGTACTGGGGTAGGATCTCGAGCAGGCTCCCCTGGGCAACGTAAGCCCCTGGTGGTCCTGAACCAATCCCACCAACAACCACTCCATCCGTCGTCCTCCGGCACCTCCATGCCTCCCAAGGCCAAATCAAGAGGACGAGGAGGCAAACGACTGGTAAAATGTGTGTGTCGGCCGGGGTGGCACGGGCCCTACTGTGGGGTACCTACCATGGTCTACCACTCTAACCTGCCCACTAAGGAGAGACTGACGCCCAGAGAGAGACCCAGGAGGGTGATCAATGCCATCAACGTGAACCATGAGTTTGATCTTCTCCACGTGAGGTTCCACGAGTTGGCCCAGGCTGTGGATCTGTTCCTGGTGTGTGAGTCTAACTTCACCGCCTACGGAGAGAGACGACCACTACGGTTCCTGCGTCTCCTCCTGAACGGAACCTATGACTACGTGCGCCACAAAATCCTCTACGTTTTCCTAGACCACTTTCCCGACGGCGGGCGCCAGGACGGCTGGATCGCAGATGATTACCTCCGTACCTACCTGACCCGCGACGGCATGGCCAGGGTGACTGGATCACGCCCCGACGACATCTTCGTCATCAACGATGCCGACGAGATCCCCGCCCGCGAGGGACTTCTTTTCCTCAAGCTGTTCGACGGGTGGACGGAACCGTTCGCCATCCACATGAGGAAGTCGCTCTACGGGTTCTTCtggaagcagCTGGGGTCGTTGGAGGTCGTGTCGGGGTGCACGGTCGGAATGCTCCGAGACGTCTATGATGCCGATGGGATACGTCTCCGGCGCCGGGAATACTACACCATGCCCGGTTTCAGGAAGTACGAGAACGACACGGGTCACATCCTGGTCCAGTGGGCCGTTGGAAGCCCCTTCCACTTTGCTGGGTGGCACTGTTCTTGGTGCTTTAGCCCTGAGGGCATCTATTTTAAACTGATCTCGGCCCAGAACGGAGACTTCCCGCGTTGGGGCGACTACGAGGACAAACGGGATCTGAATTATATCCGGGACCTGATCCGGACGGGGGGTTGGTTCGATGGATCGGTGCAGGAGTACCCCCCCTCGGACCCCAAAGAGCACATGTACGCCCCAAAGTATATGTTGGAGAATTATGAGAAGTACCTGTACCTTCTGGAGAACCCGTATGTCAAACATGATAAAATTATTGAGGGGTAACGAATTCGGGAGGGGTGGAGAATTGAAGGAAGTGAATGGGTAAGGAAGGAGGGCCCCTGGGACTCACAAGGGGGGGACATGGAAACAAAATTAGCACTCTTCATGGGTGAAGGATACAGAAGGGAGGAAAGCCTTAGCACTGATGGGGAAGGATACAGACGGAAGGAAAGCCTTAGCACTGATGGAGAAGGATACAGAAGGAAGGAAAACACTGACGTTGGAAGGACACCTAACGCAAGCTCCAACAAGTCCTTATTTTTGGGTAAAAGGGAACATTGGAACAGCTTTGGGGGGAAATGACCACTGACTACTGACAAAATAGTCCTCCCTAGAAACACTCTCTATATCAACCTCTGAGCCTCACCTACTACTTTCCTAGttctgactgacagacaggcctTTATGCTGGGTTGGTACGGTGGGGGCAGAGGGACAAAACAGGCCAATCGCAAACCTATGGAAAAAGGAAGCAAAAGATGACATTTTTGTTTCTGTTGATGTTTACTTCATCATATCGTCATAGCGACACAGACACTCCCTCATCCCGTCGCGGAATTCTCACTCACTGTTGGATACCTTCCTGTTGTGTTTTTAGTGACCccctgctaacacacacacacacacactttctcctcTCATCATATGTGAGTTAGATATAGTGCAGTCTACAGTGTATTGCTTTCCTATGGTTAATATTCTTGCTTGCAAATGAACTGACAAGAAAAAAAGGCTGAATGGTTGTAGAAACTCTCGGTTAACTTTACACACATGGAATGGGACTTCTGCATCTGTTGCTGCAAACCACTaacactctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaggtgttaATCTGTGTGCATGCGCGCACGTGTGCACTGGGGTGTGCTATCCTGAAAGGTCAGAacacaatatgtgtgtgtgtgtataactgggagacagacagacagacagacagacagacaga

Function

NR:

description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

GO: NA

KEGG:

id description
K00737 MGAT3; beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949156.1 True 3871 mRNA 0.54 7 16860390 16933566

Neighbor

gene id symbol gene type direction distance location
LOC110494924 LOC106592628 coding downstream 23675 16819145 ~ 16836715 (-)
LOC110494933 LOC106591120 coding downstream 118858 16736497 ~ 16741532 (-)
LOC110494948 LOC106564393 coding downstream 129001 16717096 ~ 16731389 (-)
LOC110494903 LOC106564394 coding downstream 148496 16706615 ~ 16711894 (-)
LOC110495074 LOC106564395 coding downstream 158562 16697311 ~ 16701828 (-)
LOC110494935 LOC106590780 coding upstream 5737 16939303 ~ 16968595 (-)
LOC110493425 LOC106594459 coding upstream 47167 16980733 ~ 16987774 (-)
LOC110495066 rayl coding upstream 155458 17089024 ~ 17108667 (-)
LOC110495065 LOC106564434 coding upstream 208497 17142063 ~ 17146929 (-)
LOC110526382 LOC107087645 coding upstream 303695 17237261 ~ 17248548 (-)
G1424225 NA non-coding downstream 5842 16852521 ~ 16854548 (-)
G1424223 NA non-coding downstream 9857 16845932 ~ 16850533 (-)
G1424226 NA non-coding downstream 14874 16844061 ~ 16845516 (-)
G1424224 NA non-coding downstream 16625 16843226 ~ 16843765 (-)
G1424306 NA non-coding upstream 62509 16996075 ~ 16996275 (-)
G1424309 NA non-coding upstream 64938 16998504 ~ 17063510 (-)
G1424337 NA non-coding upstream 148455 17082021 ~ 17084360 (-)
G1424351 NA non-coding upstream 188421 17121987 ~ 17122499 (-)
G1424227 NA other downstream 8904 16850751 ~ 16851486 (-)
G1424234 NA other downstream 87433 16770437 ~ 16772957 (-)
LOC110508387 LOC106599573 other downstream 201860 16564951 ~ 16674565 (-)
G1424038 LOC106591467 other downstream 445531 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 450262 16406731 ~ 16410128 (-)
G1424547 NA other upstream 523363 17456929 ~ 17457504 (-)
G1425321 NA other upstream 975499 17909065 ~ 17911376 (-)
G1425419 NA other upstream 1386365 18319931 ~ 18326899 (-)
LOC110487190 LOC106564382 other upstream 1426027 18359593 ~ 18494120 (-)

Expression


Co-expression Network