LOC110495065 (LOC106564434)


Basic Information

Item Value
gene id LOC110495065
gene name LOC106564434
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 17142063 ~ 17146929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948342.1
ATGACCATCTACCTCCCCACAGCCGCCCCCTCAATGCCTGAGCCCAACaccttccccccctcccctctcttcctcctcacccCTGACCCTTTCTTCAATGGATCCTACCACAACTGGACCAACCCTGGCGGTGGAGGCGTGGGGGGTTTCCAACTCACTATAGCAGGGGTCCTTATCCCCCTCATCTATGTAGCAGTCTGTGTGATCGGCCTGGTGGGCAACACATTGGTCATCTACATTGTTTTACACTATGTGAGGACGGAGTCGGTCACTAACATCTATATACTCAACCTGGCCATCGCTGATGAGCTATTCATGCTAGGCCTCCCCTTCCTGGCGGTCCAGAACGCTCTTCTCTCCTGGCCGTTTGGTTCTCTCATGTGCCGTGTGGTCATGACTGTGGACGCCATCAACCAGTTCACCGCCATCTTCTGTCTCACGGTCATGTCCATCGACCGCTACCTCGCAGTGGTCCATCCCATACGGTCGTCGTGGTGGAGGCGACCGCACGTGGCCAAGGCGGTGAACGCGGCGGTGTGGGCAGTGTCGTTTGTGGTGGTGCTGCCCGTGGTGGTGTTTGCGGACGTACTGGAGGATGATGGGAACTGTAGTATAGTGTGGCCTGAGCCAGCCGAGGTCTGGAAGGCATCGTTCATCGTGTACACGTGCACGGTCGGGTTCTTCGGACCGCTACTCGTCATCTGTCTCTGCTACCTGCTCATTGTGATCAAGGTGCGCAACGCGGGGAAACGGGCCCGGTCCACCTCCTCCCGACGCAGGAAGTCCGAACGCAAGATCACCCGCATGGTGGTTGTCGTGGTAGCAGTGTTCGTGTTGTGCTGGCTCCCATTCTACATCCTCAACATCGTTAACCTGCTAATCCTGTTACCGGGCGAATTCCGGGGGCTGTACTACTTTGTGGTGGTCCTATCGTACACTAATAGCTGCGCTAACCCAATAATTTACGGATTCCTGTCCGATAATTTTAAGAGAGGGTTCCGGAAGGCTCTTTGTCGTTCTTCGAGGAGGGTGGAGAACCACGAGAGAGCGGCAGCCACCGAGCTGCAGCGCCCTGCAGAGCTCTGGAGGGGAATTGCGCCCGAGCCGCGAGATGGCCTGGGGGTCACCAAGTCTCAtgaaggaggggaggaagaagtggaggaggaagaggagaacgggatagagatggagagaagagaagatgcCACTCAGATGAGAGAGAACTGCAGGATTGCACAGAACGGGAACGGAGGAGGACAAGTTGAGAGCTCCAGGATCTTGTTCACTCCGGGGGGAAATGTGGAGACGGTACCCCTGGGGCAGAGGGCTAAAGCTGGGGAGGAGGCTGGGAAAGGCCCAGGCTTAGAATTGGGGCCTACTGTCGCTGCCTCCACTCTTGCCAATGGATCAAAGAGTGAAAGTAACAGGTCACGTCCAGACACAGTGGAGAAGAGCCCCAAGCTAGAGATCAGCTACCTGTAACTCATAAATAAGCTTTTTCCCAATGTCCATACTAGTATACCACTGATACGGACACGTCTTGCTGAgactgaggctgtcctaatatggacactgtacAGTGTATAGAATGATGGTGAAGCTGCTCCTAGAcacgctgatcttgggtcagttttgca

Function

NR:

description
PREDICTED: somatostatin receptor type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948342.1 True 1637 mRNA 0.55 3 17142063 17146929

Neighbor

gene id symbol gene type direction distance location
LOC110495066 rayl coding downstream 33396 17089024 ~ 17108667 (-)
LOC110493425 LOC106594459 coding downstream 154289 16980733 ~ 16987774 (-)
LOC110494935 LOC106590780 coding downstream 173468 16939303 ~ 16968595 (-)
LOC110495067 LOC106590617 coding downstream 208497 16860390 ~ 16933566 (-)
LOC110494924 LOC106592628 coding downstream 305348 16819145 ~ 16836715 (-)
LOC110526382 LOC107087645 coding upstream 90332 17237261 ~ 17248548 (-)
LOC118940342 LOC106590876 coding upstream 132929 17279858 ~ 17296635 (-)
LOC110526262 LOC106590884 coding upstream 149944 17296873 ~ 17301197 (-)
LOC118940344 LOC106590712 coding upstream 576349 17723278 ~ 17727642 (-)
LOC118940345 LOC106590757 coding upstream 773292 17920221 ~ 17929855 (-)
G1424353 cuta non-coding downstream 4832 17133884 ~ 17137231 (-)
G1424354 NA non-coding downstream 8937 17132710 ~ 17133126 (-)
G1424342 NA non-coding downstream 9599 17131319 ~ 17132464 (-)
G1424351 NA non-coding downstream 19564 17121987 ~ 17122499 (-)
G1424337 NA non-coding downstream 57703 17082021 ~ 17084360 (-)
G1424474 NA non-coding upstream 103890 17250819 ~ 17254840 (-)
G1424475 cyh2 non-coding upstream 112413 17259342 ~ 17268396 (-)
G1424476 NA non-coding upstream 123928 17270857 ~ 17276918 (-)
G1424541 NA non-coding upstream 298635 17445564 ~ 17446514 (-)
G1424553 NA non-coding upstream 317521 17464450 ~ 17467690 (-)
G1424218 NA other downstream 203364 16855477 ~ 16938699 (-)
G1424227 NA other downstream 290577 16850751 ~ 16851486 (-)
G1424234 NA other downstream 369106 16770437 ~ 16772957 (-)
LOC110508387 LOC106599573 other downstream 483533 16564951 ~ 16674565 (-)
G1424547 NA other upstream 310000 17456929 ~ 17457504 (-)
G1425321 NA other upstream 762136 17909065 ~ 17911376 (-)
G1425419 NA other upstream 1173002 18319931 ~ 18326899 (-)
LOC110487190 LOC106564382 other upstream 1212664 18359593 ~ 18494120 (-)
G1425652 NA other upstream 1478827 18625756 ~ 18627041 (-)

Expression


Co-expression Network