XLOC_003328 (zfyve9b)


Basic Information

Item Value
gene id XLOC_003328
gene name zfyve9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13058613 ~ 13088179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006515
GCGCGCAGGCTCTGATGACGAGCACAAGTCAACAGTGCAGCGGCGAAGATGGGATGCAGAGATCGTGGACTTTGCGTGGGCCATGTTGTGATGGTCTGAAGGTAAAACAAAGCTTAGGCTGGGCTAAAATATGATCAGTAATCTTCTGGCATTGAGCTCTCTCCACTGAGGCAATGAGGCAAGCGGTAACCGCCACTCTGTCAGTGTGGGGCGAGAGGCGTTTCGGCTACTCCACCCTCAAGGACTCCAGCGAATCTCTGCTGGACGAGCGCAAGCTGAGGCCTGGCCTGAAAGAAGACTCTGTTATTGAAGAGAAGGAGAGAGCAGAGAATGAGCAGGAGCAGCTGGAGGCCGTGCTGGGACCTCCATCGTCCCCTGTGGAGGACACCCACCAATCAGGCACCACAGAGCCCTCAGATGCCATGCTGGAGTCATGCCAGGACCAGAAGACGAGTGATGGGATGGAGGCGTCTCTAGTGTCTGGCCCCAAGAACATTGATTCTGGGAGGAAGGGGTCTCTTGGTGCTTTGCCAGTGCAGCGCTGCAGTTCCCTGGGCACTACGGCCCCTCAATGGGTCCCTGATTCCCAGGCACCAGCATGCATGAAATGTGGATCCAAATTCTCCTTCACTAAAAGACGTCATCACTGCAGAGCATGTGGGAAGGTTTTTTGTGTGGTGTGCTGTGATCTGAGATACAAACTCACTCATCTGGGTGGGAAAGAGGGTCGCGTTTGTGTCACCTGTCATTCAACTTTGATTAATCGCACACTTCGAAAGGACCAAAAGAAGGTTTGGTTTGCAGATAATGTCCTTCCTCAATCTGAAAGTAGAAGTGCCAACAGTTCACCTATACACAGGAGTGTGTCCCACACACAGAGCGCTGGACTCGCTCAGGCGgATGTGTCTGACCTTAGAGCAGCAGATGAAGTCAGTGGTCTTAGTAGCAACACGAAGCCCACTCCACCAAAGGACCTTCCACCTATTCTGACATCAACAGGGGTCAAAGGAGATTATACTCTGGAGGAGAAGAGAACAGAGTCGTCACTCTTAGAGGAGTTGGAGAGAGGTCTTGCAGAGCCTTTAGTGTTTGTGCTTAATGCAAACCTTCTGGCTGTGGTGAAGATCGTCAGCTATGTGAACCGACGGTGCTGGTGTGTAATGTCGAAGGGCATGCATGCTGTTGGACAGCCTGAGGTGGTCATTCTACTGCAGTGTTTGCCGGAGGAGAAGAGATTCCCGACGGATATTTTCAATCATTTCATTCAGATCTACTGGGACGCCCAAACAGCAGGGAAGCTTCTGAATCACCTCAGTCACTCTTTGGTGTCCCGAGGCTTTCTGGGTAATAATGAGCATGCTGGATTTGTTTACGTGCGCCCGACATTCCAGTCTCTGGAGGGCTTGCCATTACCTGCACCACCATTCCTGTTCGGGCTGCTCATGCTCCGTGCAGAGGTTCCATGGGCCAAAGCCTTTCCCCTGAGACTCATGCTGCGTCTAGGAGCTGAGTATAGATTCTACCCCTGTCCCCTGTTCAGTGTGCGCTTCAGAGAACCTCTATTTGGACCTGTTAACAACAGTATAATGAGACTCTTAGTGGATTTCCGTTTTTACCGTTACACATTGCCGACAGTTCCTGGGCTTGTGGTTGATTTAGAGGCAAGAAGTACCTGTATAAGAATACCTAAAACACATCATCCAGAGCTGCTGAAGGCTCTGAATAAGTCTAATGAGAGAGTGCTGGCTCTGGGCGCCTGCTTTAATGAGCAGGCCGACTCTCATCTCATTTGCGTGCAGACGGCAGATGGACAGTACCAGACCCAGGCCATCAGCATTCACAGCCAGCCACGTAGAGTCACCGGCTCATGTTTTTTCGTGTTCAGTGGAGCACTCAAACCTTCTTCAGGGTACTTGGCCAAGTCCAGCATTGTGGAAGATGGTTTGATGGTGCAGATCACCATGGAGACCATGGCTGAGTTACGTCGATGCCTGCGGGACATGAAAGACTTCACAGTGACCTGTGGAAAACTCCACCCAGCCGAGAGACAGGAATATGTGCACATTCAGTGGCAGGATGAAGAGCCGCGCTTTAATAAAGGCATCGTCAGCCCCATTGATGGCAAGTCTATGGAGTCTCTCACCAACATCAAGACCCATCAGCGCTTAGAATTCAGAGCCAATGGGAAGCTCATACGCTGGACAGAGGTGTACTACTTGCTGAAAGACCAGCATCCAAATGGTCTGAATAATCACACCAGCCATAACCGTCTAACAGAACGTCTTGCCCGGGCATTCTGCCTGGCACTGTGCCAGTCTCTCTGTTTGCTGAAGGAGGACGGCATGACCAAACTGGCACTGAGAGTTATCCTGGATGGACAGAAGATGGAGTTTTTGGCAGGCAGTAACGGCCAGCGCCTTCCAGCCCCGTACCAGGACTGTCTGAACCAATCGTTAATGTCTGTGGTGCAGAGTAACTCTCAGTACCAGGGTCTCGCCGCCTGCCAGCTGGAGCTCATCTTCTATATTCTGGAGGACA
>TCONS_00006516
GCGTTCTGAAACACGTCTTGCGCATTCGATGCCCAAGTTACACATAGTAAACTATCTGCAGTTGTAAGTTATTTGAACTTAGTAAGTTAAATATAGGCTTTAAAATAACTAATGGAGGGAAACTACCATTATTTTCTCACTGGAAAACTTTGTTGCTTATCAAACACAGCCTGAGGCATGAATTTTAATGATGTAAAAGCTACATGAGTCTAGGTTCTCTTGATGACATCAGGTCtggatgaatgacctaaagtagtCATAAATGCAAATGCATGGCCCATGAGGCttgtcacagtttgttttgtcctTTAATTGGTCCATTGTCCTTtggatttttacatattgatttTACATGATAACGGGTAAACAATGGTCTCGAAGGCTCATAATATGTCCATTTGCATATATTGATCTCTTATTATTCTATCATGCCTTTATATATACCTAGATTTTctttatagggcacctttaaattagatttaaaagcaAATTCTAATTCACAGCAAAATACATTTCTATAGCATTTTGATTTTATGGTggtttttaaccctttaactggcACCCGTTTATGCACGTCTAAAGTATCTAAAGTATTTGATTTGTATTTAGTACATAATTACGAGGTATTAAAGACCATTTCTTGTGTGTTTATATTCAGATTATACTCTGGAGGAGAAGAGAACAGAGTCGTCACTCTTAGAGGAGTTGGAGAGAGGTCTTGCAGAGCCTTTAGTGTTTGTGCTTAATGCAAACCTTCTGGCTGTGGTGAAGATCGTCAGCTATGTGAACCGACGGTGCTGGTGTGTAATGTCGAAGGGCATGCATGCTGTTGGACAGCCTGAGGTGGTCATTCTACTGCAGTGTTTGCCGGAGGAGAAGAGATTCCCGACGGATATTTTCAATCATTTCATTCAGATCTACTGGGACGCCCAAACAGGTGACACTTGATTCAGATGTTCAACATTAGACCAAACAAAGGCTTGAAAAAATTCTTAATCTTGCTGTTTCTCCAAGTAGCAGGGAAGCTTCTGAATCACCTCAGTCACTCTTTGGTGTCCCGAGGCTTTCTGGGTAATAATGAGCATGCTGGATTTGTTTACGTGCGCCCGACATTCCAGTCTCTGGAGGGCTTGCCATTACCTGCACCACCATTCCTGTTCGGGCTGCTCATGCTCCGTGCAGAGGTTCCATGGGCCAAAGCCTTTCCCCTGAGACTCATGCTGCGTCTAGGAGCTGAGTATAGATTCTACCCCTGTCCCCTGTTCAGTGTGCGCTTCAGAGAACCTCTATTTGGACCTGTTAACAACAGTATAATGAGACTCTTAGTGGATTTCCGTTTTTACCGTTACACATTGCCGACAGTTCCTGGGCTTGTGGTTGATTTAGAGGCAAGAAGTACCTGTATAAGAATACCTAAAACACATCATCCAGAGCTGCTGAAGGCTCTGAATAAGTCTAATGAGAGAGTGCTGGCTCTGGGCGCCTGCTTTAATGAGCAGGCCGACTCTCATCTCATTTGCGTGCAGACGGCAGATGGACAGTACCAGACCCAGGCCATCAGCATTCACAGCCAGCCACGTAGAGTCACCGGCTCATGTTTTTTCGTGTTCAGTGGAGCACTCAAACCTTCTTCAGGGTACTTGGCCAAGTCCAGCATTGTGGAAGATGGTTTGATGGTGCAGATCACCATGGAGACCATGGCTGAGTTACGTCGATGCCTGCGGGACATGAAAGACTTCACAGTGACCTGTGGAAAACTCCACCCAGCCGAGAGACAGGAATATGTGCACATTCAGTGGCAGGATGAAGAGCCGCGCTTTAATAAAGGCATCGTCAGCCCCATTGATGGCAAGTCTATGGAGTCTCTCACCAACATCAAGACCCATCAGCGCTTAGAATTCAGAGCCAATGGGAAGCTCATACGCTGGACAGAGGTGTACTACTTGCTGAAAGACCAGCATCCAAATGGTCTGAATAATCACACCAGCCATAACCGTCTAACAGAACGTCTTGCCCGGGCATTCTGCCTGGCACTGTGCCAGTCTCTCTGTTTGCTGAAGGAGGACGGCATGACCAAACTGGCACTGAGAGTTATCCTGGATGGACAGAAGGTGAGACAGGGCTCTATTTTTTTAACGTCATATagacactcaccagccactttattaggtattccTTGCTAG
>TCONS_00006517
ATGTTCAACATTAGACCAAACAAAGGCTTGAAAAAATTCTTAATCTTGCTGTTTCTCCAAGTAGCAGGGAAGCTTCTGAATCACCTCAGTCACTCTTTGGTGTCCCGAGGCTTTCTGGGTAATAATGAGCATGCTGGATTTGTTTACGTGCGCCCGACATTCCAGTCTCTGGAGGGCTTGCCATTACCTGCACCACCATTCCTGTTCGGGCTGCTCATGCTCCGTGCAGAGGTTCCATGGGCCAAAGCCTTTCCCCTGAGACTCATGCTGCGTCTAGGAGCTGAGTATAGATTCTACCCCTGTCCCCTGTTCAGTGTGCGCTTCAGAGAACCTCTATTTGGACCTGTTAACAACAGTATAATGAGACTCTTAGTGGATTTCCGTTTTTACCGTTACACATTGCCGACAGTTCCTGGGCTTGTGGTTGATTTAGAGGCAAGAAGTACCTGTATAAGAATACCTAAAACACATCATCCAGAGCTGCTGAAGGCTCTGAATAAGTCTAATGAGAGAGTGCTGGCTCTGGGCGCCTGCTTTAATGAGCAGGCCGACTCTCATCTCATTTGCGTGCAGACGGCAGATGGACAGTACCAGACCCAGGCCATCAGCATTCACAGCCAGCCACGTAGAGATGGTTTGATGGTGCAGATCACCATGGAGACCATGGCTGAGTTACGTCGATGCCTGCGGGACATGAAAGACTTCACAGTGACCTGTGGAAAACTCCACCCAGCCGAGAGACAGGAATATGTGCACATTCAGTGGCAGGATGAAGAGCCGCGCTTTAATAAAGGCATCGTCAGCCCCATTGATGGCAAGTCTATGGAGTCTCTCACCAACATCAAGACCCATCAGCGCTTAGAATTCAGAGCCAATGGGAAGCTCATACGCTGGACAGAGGTGTACTACTTGCTGAAAGACCAGCATCCAAATGGTCTGAATAATCACACCAGCCATAACCGTCTAACAGAACGTCTTGCCCGGGCATTCTGCCTGGCACTGTGCCAGTCTCTCTGTTTGCTGAAGGAGGACGGCATGACCAAACTGGCACTGAGAGTTATCCTGGATGGACAGAAGATGGAGTTTTTGGCAGGCAGTAACGGCCAGCGCCTTCCAGCCCCGTACCAGGACTGTCTGAACCAATCGTTAATGTCTGTGGTGCAGAGTAACTCTCAGTACCAGGGTCTCGCCGCCTGCCAGCTGGAGCTCATCTTCTATATTCTGGAGGACACGTCAtag

Function

symbol description
zfyve9b Predicted to enable metal ion binding activity. Predicted to be involved in liver development. Predicted to be active in endosome. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9).

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0005768 endosome cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110825-2 Predicted to enable metal ion binding activity. Predicted to be involved in liver development. Predicted to be active in endosome. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9).

Ensembl:

ensembl_id ENSDARG00000100764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006515 False 2538 mRNA 0.52 16 13058613 13088171
TCONS_00006516 False 2183 mRNA 0.44 9 13067028 13085528
TCONS_00006517 True 1239 mRNA 0.50 8 13071645 13088179

Neighbor

gene id symbol gene type direction distance location
XLOC_003326 btf3l4 coding upstream 2806 13024002 ~ 13055807 (+)
XLOC_003327 ptgfr coding upstream 20380 13032483 ~ 13038233 (+)
XLOC_003325 si:dkey-11m19.5 coding upstream 102875 12879635 ~ 12955738 (+)
XLOC_003324 zgpat coding upstream 183425 12860260 ~ 12875188 (+)
XLOC_003323 rtel1 coding upstream 199350 12811906 ~ 12859263 (+)
XLOC_003329 CR847923.1 coding downstream 63740 13151919 ~ 13152385 (+)
XLOC_003330 mob3c coding downstream 71809 13159988 ~ 13174477 (+)
XLOC_003331 mknk1 coding downstream 88389 13176568 ~ 13189751 (+)
XLOC_003332 NA coding downstream 105544 13193723 ~ 13194597 (+)
XLOC_003333 atp5f1b coding downstream 119719 13207898 ~ 13213059 (+)
XLOC_003318 CR450764.6 misc upstream 346617 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 364350 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 373014 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 378585 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 434762 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 3034607 16122786 ~ 16123082 (+)
XLOC_003322 NA non-coding upstream 273554 12782215 ~ 12785059 (+)
XLOC_003319 NA non-coding upstream 340211 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 535584 12522770 ~ 12523029 (+)
XLOC_003304 NA non-coding upstream 564436 12493872 ~ 12494177 (+)
XLOC_003302 NA non-coding upstream 591553 12466766 ~ 12467060 (+)
XLOC_003341 CR555295.2 non-coding downstream 729390 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 non-coding downstream 776667 13864846 ~ 13864964 (+)
XLOC_003344 CT956066.1 non-coding downstream 993361 14081540 ~ 14082177 (+)

Expression


Co-expression Network