LOC110494023 (LOC106565171)


Basic Information

Item Value
gene id LOC110494023
gene name LOC106565171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48632152 ~ 48634553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568689.2
AGGAAGTGGATAGTGATTCTTTCCACGTCACACCGCAGCCCGAATTTCAACGTCAAGCGAACGCCGCATAGTCATGCTGATTGAGAATAGAACATTGCACGCAATTAAGGACAATTTTCATAATCTCTATGCAATTTAAATATTGACATTCCGGAAAAGGTATCAACTCCCCCTTGTGGGGTAAAAAGGTAGCTGTGGTTGCCCTGACGTTGGATGCGCACAGTTCTACCTGTCAGTCTCTTGTACGAAGGAAAGTCCGAAAACCATGGCGGAACTCCCCGAATCAGAACCCCGAATTTACAGTGTTGGGAAAGTCGCATGTGGGATACTGACTCACGTGCTTTGTGTTGTCTTCACTGTGCTTATCACGGTATTGGCCAAGCCTGGAACAAGTTTGTTCTCTTGGCACCCTTTCCTGATGACACTGGCGTTCTCCCTCTTCATGACAGAGGCtgtgctcctcttctctccacattGCTCTCCCATTCGGAAGCTTTCCCACAAGACCAAGGGGCGTGTCCACTGGATCCTGCAGTGCCTctgtgccagctgtgccaccctGGGCCTGGCATCCATCTTCTACAACAAGCACCTGAACGGCAAGCCCCACTTCGCCTCGTGGCACGGCCTGGTGGGCCTGGGGACATTGTGTGTTGTTGGGGTGCAGTCTCTGGCCGCTCTGCCCCTCCTCTACCACTCCCTGGCTAAGGGGTGGTCCCTGGCTAAGCTAAAGCGCTACCACGCAGCGTCTGGCCTAGTCACTTATCTGCTGGGAAGTGTCAGTCTGCTCCTGGGCATATGCTCAGTGTGGTTTACAGGCACTGTGGGAGGATACACCTGGTACCTGGCAGCACTTTGCCCTGCCCTCAGCACCCTGGTCATCATGAGCCAGGTGTCCAATACCTACATGGCTAAGAAACGGCTGGTGTCCTAACCAGGCTGGCCGCCAAAGCCAAGCTCACAAACATCAGCCATAAACTATTACTGTATTCAAATGAAGCTTTAATAAAAGCTTTACCGTAAGGCTATCTTTGGAAGACCAACCTGCATTCTGCCTAATGTCCAAAAGTACCAGTGCCTTATATTGGTGAAATTATTATTTTGTTACATCTACTGCTGAACTAGTTCTAATTTCAAAGTTTGGTCTTTGTATGTTAATTCTACCTTGAGCAAAAAAAGTGCACGGAATCATCAATGAGCATAGCTTGGctgtctaaaaaaaaaatatgataacaGGCCTCGGTCTTTTGGAGTAtttagtagtatatagtagtagtatttagtagtatatagtagtagtatttagtagtatatagtagtagtattttgTATCCGAGAGCCAAGAAAGCCTGTTATGTGTCTAACGAAGTACAAATATTGGTTGTTAACCATGGAAAACAACTAGAGGCCACTGATGCTGCTTGATTTTATTTGCCTTTGGGCTTGAATGGACCAATGCACATTTTTTGTGATTGGTTTGTTTTTATAAGGTGATACATTTGTGTATTAGTTTACACTAAGGTGTGAAATTCCAGCCGAATCCGTAAGATGTCATATTTACTGATATGGTAGGCTGACTGCAATGAAGAGTCAAAAAAACAGTGTAGTGTTTACTCCCATACATTCTGTAACTCCATTACCCTCAATTTTCTTACTGATAGGACATACGCAGTTTCATCATAACCGCATCATATTCAAATCCATTATCCTCACATGGGCGTTTCATAGATTCCCGGCTGCAAGAGTGCAATTGAAGGTCGAGTTGAACATAATTCTTGGAATATACTGCAGATTATTACTGATTATTGTTGACATGTTTTGTCAAATTTATATTTTGATGcaatttcaataaaaaaatacattttgcata
>XM_021568690.2
TTTCCACGTCACACCGCAGCCCGAATTTCAACGTCAAGCGAACGCCGCATAGTCATGCTGATTGAGAATAGAACATTGCACGCAATTAAGGACAATTTTCATAATCTCTATGCAATTTAAATATTGACATTCCGCTTTTCTGTTTTCAGGAAAAGGTATCAACTCCCCCTTGTGGGGTAAAAAGGTAGCTGTGGTTGCCCTGACGTTGGATGCGCACAGTTCTACCTGTCAGTCTCTTGTACGAAGGAAAGTCCGAAAACCATGGCGGAACTCCCCGAATCAGAACCCCGAATTTACAGTGTTGGGAAAGTCGCATGTGGGATACTGACTCACGTGCTTTGTGTTGTCTTCACTGTGCTTATCACGGTATTGGCCAAGCCTGGAACAAGTTTGTTCTCTTGGCACCCTTTCCTGATGACACTGGCGTTCTCCCTCTTCATGACAGAGGCtgtgctcctcttctctccacattGCTCTCCCATTCGGAAGCTTTCCCACAAGACCAAGGGGCGTGTCCACTGGATCCTGCAGTGCCTctgtgccagctgtgccaccctGGGCCTGGCATCCATCTTCTACAACAAGCACCTGAACGGCAAGCCCCACTTCGCCTCGTGGCACGGCCTGGTGGGCCTGGGGACATTGTGTGTTGTTGGGGTGCAGTCTCTGGCCGCTCTGCCCCTCCTCTACCACTCCCTGGCTAAGGGGTGGTCCCTGGCTAAGCTAAAGCGCTACCACGCAGCGTCTGGCCTAGTCACTTATCTGCTGGGAAGTGTCAGTCTGCTCCTGGGCATATGCTCAGTGTGGTTTACAGGCACTGTGGGAGGATACACCTGGTACCTGGCAGCACTTTGCCCTGCCCTCAGCACCCTGGTCATCATGAGCCAGGTGTCCAATACCTACATGGCTAAGAAACGGCTGGTGTCCTAACCAGGCTGGCCGCCAAAGCCAAGCTCACAAACATCAGCCATAAACTATTACTGTATTCAAATGAAGCTTTAATAAAAGCTTTACCGTAAGGCTATCTTTGGAAGACCAACCTGCATTCTGCCTAATGTCCAAAAGTACCAGTGCCTTATATTGGTGAAATTATTATTTTGTTACATCTACTGCTGAACTAGTTCTAATTTCAAAGTTTGGTCTTTGTATGTTAATTCTACCTTGAGCAAAAAAAGTGCACGGAATCATCAATGAGCATAGCTTGGctgtctaaaaaaaaaatatgataacaGGCCTCGGTCTTTTGGAGTAtttagtagtatatagtagtagtatttagtagtatatagtagtagtatttagtagtatatagtagtagtattttgTATCCGAGAGCCAAGAAAGCCTGTTATGTGTCTAACGAAGTACAAATATTGGTTGTTAACCATGGAAAACAACTAGAGGCCACTGATGCTGCTTGATTTTATTTGCCTTTGGGCTTGAATGGACCAATGCACATTTTTTGTGATTGGTTTGTTTTTATAAGGTGATACATTTGTGTATTAGTTTACACTAAGGTGTGAAATTCCAGCCGAATCCGTAAGATGTCATATTTACTGATATGGTAGGCTGACTGCAATGAAGAGTCAAAAAAACAGTGTAGTGTTTACTCCCATACATTCTGTAACTCCATTACCCTCAATTTTCTTACTGATAGGACATACGCAGTTTCATCATAACCGCATCATATTCAAATCCATTATCCTCACATGGGCGTTTCATAGATTCCCGGCTGCAAGAGTGCAATTGAAGGTCGAGTTGAACATAATTCTTGGAATATACTGCAGATTATTACTGATTATTGTTGACATGTTTTGTCAAATTTATATTTTGATGcaatttcaataaaaaaatacattttgcata

Function

NR:

description
cytochrome b561 domain-containing protein 2

GO: NA

KEGG:

id description
K08371 CYB561D2; transmembrane reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568689.2 False 1870 mRNA 0.44 4 48632152 48634553
XM_021568690.2 True 1866 mRNA 0.44 4 48632171 48634553

Neighbor

gene id symbol gene type direction distance location
LOC110494018 LOC106565175 coding upstream 48485 48579310 ~ 48583667 (+)
LOC110494016 LOC106565178 coding upstream 116860 48509877 ~ 48515292 (+)
LOC110494013 LOC106565177 coding upstream 207674 48389082 ~ 48424478 (+)
tpgs2 tpgs2 coding upstream 278094 48348965 ~ 48354058 (+)
LOC110494009 LOC106565181 coding upstream 302706 48307825 ~ 48329446 (+)
bap1 LOC106565169 coding downstream 42454 48677007 ~ 48690097 (+)
bsnb LOC106565168 coding downstream 58771 48693321 ~ 48814670 (+)
erc2 LOC106583361 coding downstream 232036 48866589 ~ 49040356 (+)
LOC118940102 NA coding downstream 343083 48977636 ~ 48980567 (+)
LOC110494028 LOC106565296 coding downstream 375455 48977901 ~ 49120417 (+)
G1457973 NA non-coding upstream 22573 48608220 ~ 48609579 (+)
G1457311 NA non-coding upstream 56929 48574999 ~ 48575223 (+)
G1457188 NA non-coding upstream 159857 48456820 ~ 48472295 (+)
G1457215 NA non-coding upstream 244396 48387002 ~ 48387756 (+)
G1458072 NA non-coding downstream 114991 48749544 ~ 48749764 (+)
G1458083 NA non-coding downstream 129073 48763626 ~ 48763825 (+)
G1458033 NA non-coding downstream 138504 48773057 ~ 48773274 (+)
G1458093 NA non-coding downstream 140912 48775465 ~ 48775684 (+)
glrx LOC106565191 other upstream 595569 48030892 ~ 48036585 (+)
G1456969 NA other upstream 792782 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 824671 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1403356 47228219 ~ 47228796 (+)
G1458807 NA other downstream 804453 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1546612 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 1796254 50427145 ~ 50437612 (+)

Expression


Co-expression Network