tpgs2 (tpgs2)


Basic Information

Item Value
gene id tpgs2
gene name tpgs2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48348965 ~ 48354058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568673.2
AATGATAATGAATGAGATCTTTTTATGCTTTTTGTTATTGCATGTGTGGATTCATGTTTTCCCTTCTCCATAATGaatgtactttttttttcttcaccccGTCCAGTTGGGGGCGGCAATACAACAATAATTGTGGTGCACCATAACATCTCAGAGAAGAAGATAATCTGCGACTCCTCCAGAAAATTAACTGTTAGATGGATTTTATTAATATTTCTCTGCTGTGATTTCTAATTATTCAAATGGAGGAGACAAAGGAAGGTTTAACATGTAAAGGGGTCGCTGAAAGGCTGACACTCGGCATCACCAGAGTACTTGGTGTCACAGAGAGTATGCCCGGGGTGATGGACGTGCGTTTTGTGGAGAGGGAGCCTGCAGAGAAGCGATGCCTGCTGTCATGGGAACAGAAAAATACCTGTGTTCTGCCCGAGGACCTCCGAGACTTTTATCTCACAACGGATGGCTTCACCCTTACCTGGAGTGCCAAACTCGAGAGATGCATGGTGCTCAACGGTGTGGCCAACCTGCGTCCTCTTTGCCAGTCATCGTCAGTGTTCTCCCTCCCCAACGCACCCTCACTGGCTGACCTGGACTGGGACGAAGAACAAGTTGAAGAGTCAGAGTGTGGGCTGGTGGAGCCCCATTTTGATTCCAGGAGCCGTATCTTTGAGCTGGACCCCTGCAGTGGGAATGGCAAAGTCTGCCTGGTCTACAAAGACTGCACAGAAGGTGTGGTGGCCCAGAAGTGTGAGGTGTGGTTCCTGGATCGCTCTCTGTACTGGCACTACCTAACACCCAGCTTCACCGCCTACTACCGCCTGATGATCACCAACTTAGGCCTGCCAGAGTGGCAGAACGCCTTCACCCCCTACGGCCCCAGTCCCCAGGCCAAGCAGTGGGCGTCTCTCTACCAGCCCCTGAGTTTCCACTGTGAGCCCAGTATGGCCGACCTCACCGGAGATCCGCCTGTCAACAAGCTGGACCCCAGCAAAGCCTTCCGGGGCAAAGCAAAGCTGCCCGCCCCGAAGAAGAAACAGTCGCCccagggaggggtggggggcacTGCCAAGGGGCAGGGGAGCTCAGGGAGGCATAGTGGGGGCAGGCGATAAGGAAActtcccctcccccaccccccaaaaaatacatatTCAATGGGCTATGGCAGTGTTTCCCCTGCATTTGTTTCTTGAGTGGGGTGAAAAGGGCCCGGAAGCAACATATCTGGCTGCTACCATTCAGAATATTGAAGCTAACGATCTATGTGGTAGGTAATGGGGCTACAGCGCTTGGCTTCTCAAGTAAGTAATGGCAGGGAAACGGTAGCTATGTATTATACCACTATAAATGCTTCTCCTcctgagtgtgtgggtgtgtgtgtgtgtgtgtgtgcgtgcctgacATGTTTTTTCTAGCAATGCTGCTATTCCCTGTGAAGCCTTGTAGGCCATCCTGTTGATCctatttatttcccttttgtgtCTATGGCTGTATGTATTTCCTATTAAAGGCAGATGAGAATCGT
>XM_021568671.2
TTTATGCTTTTTGTTATTGCATGTGTGGATTCATGTTTTCCCTTCTCCATAATGaatgtactttttttttcttcaccccGTCCAGTTGGGGGCGGCAATACAACAATAATTGTGGTGCACCATAACATCTCAGAGAAGAAGATAATCTGCGACTCCTCCAGAAAATTAACTGTTAGATGGATTTTATTAATATTTCTCTGCTGTGATTTCTAATTATTCAAATGGAGGAGACAAAGGAAGGTTTAACATGTAAAGGGGTCGCTGAAAGGCTGACACTCGGCATCACCAGAGTACTTGGTGTCACAGAGAGTATGCCCGGGGTGATGGACGTGCGTTTTGTGGAGAGGGAGCCTGCAGAGAAGCGATGCCTGCTGTCATGGGAACAGAAAAATACCTGTGTTCTGCCCGAGGACCTCCGAGACTTTTATCTCACAACGGATGGCTTCACCCTTACCTGGAGTGCCAAACTCGAGAATGAATCTGTGCCTTTAGGATGCATGGTGCTCAACGGTGTGGCCAACCTGCGTCCTCTTTGCCAGTCATCGTCAGTGTTCTCCCTCCCCAACGCACCCTCACTGGCTGACCTGGACTGGGACGAAGAACAAGTTGAAGAGTCAGAGTGTGGGCTGGTGGAGCCCCATTTTGATTCCAGGAGCCGTATCTTTGAGCTGGACCCCTGCAGTGGGAATGGCAAAGTCTGCCTGGTCTACAAAGACTGCACAGAAGGTGTGGTGGCCCAGAAGTGTGAGGTGTGGTTCCTGGATCGCTCTCTGTACTGGCACTACCTAACACCCAGCTTCACCGCCTACTACCGCCTGATGATCACCAACTTAGGCCTGCCAGAGTGGCAGAACGCCTTCACCCCCTACGGCCCCAGTCCCCAGGCCAAGCAGTGGGCGTCTCTCTACCAGCCCCTGAGTTTCCACTGTGAGCCCAGTATGGCCGACCTCACCGGAGATCCGCCTGTCAACAAGCTGGACCCCAGCAAAGCCTTCCGGGGCAAAGCAAAGCTGCCCGCCCCGAAGAAGAAACAGTCGCCccagggaggggtggggggcacTGCCAAGGGGCAGGGGAGCTCAGGGAGGCATAGTGGGGGCAGGCGATAAGGAAActtcccctcccccaccccccaaaaaatacatatTCAATGGGCTATGGCAGTGTTTCCCCTGCATTTGTTTCTTGAGTGGGGTGAAAAGGGCCCGGAAGCAACATATCTGGCTGCTACCATTCAGAATATTGAAGCTAACGATCTATGTGGTAGGTAATGGGGCTACAGCGCTTGGCTTCTCAAGTAAGTAATGGCAGGGAAACGGTAGCTATGTATTATACCACTATAAATGCTTCTCCTcctgagtgtgtgggtgtgtgtgtgtgtgtgtgtgcgtgcctgacATGTTTTTTCTAGCAATGCTGCTATTCCCTGTGAAGCCTTGTAGGCCATCCTGTTGATCctatttatttcccttttgtgtCTATGGCTGTATGTATTTCCTATTAAAGGCAGATGAGAATCGT
>XM_021568672.2
GTGTGGATTCATGTTTTCCCTTCTCCATAATGaatgtactttttttttcttcaccccGTCCAGTTGGGGGCGGCAATACAACAATAATTGTGGTGCACCATAACATCTCAGAGAAGAAGATAATCTGCGACTCCTCCAGAAAATTAACTGTTAGATGGATTTTATTAATATTTCTCTGCTGTGATTTCTAATTATTCAAATGGAGGAGACAAAGGAAGGTTTAACATGTAAAGGGGTCGCTGAAAGGCTGACACTCGGCATCACCAGAGTACTTGAGAGTATGCCCGGGGTGATGGACGTGCGTTTTGTGGAGAGGGAGCCTGCAGAGAAGCGATGCCTGCTGTCATGGGAACAGAAAAATACCTGTGTTCTGCCCGAGGACCTCCGAGACTTTTATCTCACAACGGATGGCTTCACCCTTACCTGGAGTGCCAAACTCGAGAATGAATCTGTGCCTTTAGGATGCATGGTGCTCAACGGTGTGGCCAACCTGCGTCCTCTTTGCCAGTCATCGTCAGTGTTCTCCCTCCCCAACGCACCCTCACTGGCTGACCTGGACTGGGACGAAGAACAAGTTGAAGAGTCAGAGTGTGGGCTGGTGGAGCCCCATTTTGATTCCAGGAGCCGTATCTTTGAGCTGGACCCCTGCAGTGGGAATGGCAAAGTCTGCCTGGTCTACAAAGACTGCACAGAAGGTGTGGTGGCCCAGAAGTGTGAGGTGTGGTTCCTGGATCGCTCTCTGTACTGGCACTACCTAACACCCAGCTTCACCGCCTACTACCGCCTGATGATCACCAACTTAGGCCTGCCAGAGTGGCAGAACGCCTTCACCCCCTACGGCCCCAGTCCCCAGGCCAAGCAGTGGGCGTCTCTCTACCAGCCCCTGAGTTTCCACTGTGAGCCCAGTATGGCCGACCTCACCGGAGATCCGCCTGTCAACAAGCTGGACCCCAGCAAAGCCTTCCGGGGCAAAGCAAAGCTGCCCGCCCCGAAGAAGAAACAGTCGCCccagggaggggtggggggcacTGCCAAGGGGCAGGGGAGCTCAGGGAGGCATAGTGGGGGCAGGCGATAAGGAAActtcccctcccccaccccccaaaaaatacatatTCAATGGGCTATGGCAGTGTTTCCCCTGCATTTGTTTCTTGAGTGGGGTGAAAAGGGCCCGGAAGCAACATATCTGGCTGCTACCATTCAGAATATTGAAGCTAACGATCTATGTGGTAGGTAATGGGGCTACAGCGCTTGGCTTCTCAAGTAAGTAATGGCAGGGAAACGGTAGCTATGTATTATACCACTATAAATGCTTCTCCTcctgagtgtgtgggtgtgtgtgtgtgtgtgtgtgcgtgcctgacATGTTTTTTCTAGCAATGCTGCTATTCCCTGTGAAGCCTTGTAGGCCATCCTGTTGATCctatttatttcccttttgtgtCTATGGCTGTATGTATTTCCTATTAAAGGCAGATGAGAATCGT

Function

symbol description
tpgs2 Predicted to act upstream of or within protein polyglutamylation. Orthologous to human TPGS2 (tubulin polyglutamylase complex subunit 2).

NR:

description
tubulin polyglutamylase complex subunit 2 isoform X2

GO: NA

KEGG:

id description
K16605 TPGS2; tubulin polyglutamylase complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568673.2 False 1524 mRNA 0.51 7 48348965 48354058
XM_021568671.2 False 1521 mRNA 0.51 7 48348986 48354058
XM_021568672.2 True 1490 mRNA 0.51 7 48349008 48354058

Neighbor

gene id symbol gene type direction distance location
LOC110494009 LOC106565181 coding upstream 19519 48307825 ~ 48329446 (+)
ubap2a LOC106565184 coding upstream 113774 48194992 ~ 48235191 (+)
dcaf12 LOC106565186 coding upstream 169702 48152982 ~ 48179263 (+)
ubap1 LOC106565187 coding upstream 201721 48103537 ~ 48147244 (+)
glrx LOC106565191 coding upstream 312380 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 coding downstream 35035 48389082 ~ 48424478 (+)
LOC110494016 LOC106565178 coding downstream 155819 48509877 ~ 48515292 (+)
LOC110494018 LOC106565175 coding downstream 225252 48579310 ~ 48583667 (+)
LOC110494023 LOC106565171 coding downstream 278094 48632152 ~ 48634553 (+)
bap1 LOC106565169 coding downstream 322949 48677007 ~ 48690097 (+)
G1457158 NA non-coding upstream 78919 48269373 ~ 48270046 (+)
G1457157 NA non-coding upstream 80084 48268622 ~ 48268881 (+)
G1457156 NA non-coding upstream 80873 48267876 ~ 48268092 (+)
G1457155 NA non-coding upstream 81232 48267420 ~ 48267733 (+)
G1457154 NA non-coding upstream 82038 48266546 ~ 48266927 (+)
G1457210 NA non-coding downstream 20893 48374951 ~ 48375172 (+)
G1457214 NA non-coding downstream 29673 48383731 ~ 48383983 (+)
G1457215 NA non-coding downstream 32944 48387002 ~ 48387756 (+)
G1457188 NA non-coding downstream 102762 48456820 ~ 48472295 (+)
G1456969 NA other upstream 509595 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 541484 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1120169 47228219 ~ 47228796 (+)
G1454824 NA other upstream 2490464 45856249 ~ 45858501 (+)
bsnb LOC106565168 other downstream 339263 48693321 ~ 48814670 (+)
erc2 LOC106583361 other downstream 568749 48866589 ~ 49040356 (+)
G1458807 NA other downstream 1084948 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1827107 50181045 ~ 50192699 (+)

Expression


Co-expression Network