LOC110494981 (LOC106565126)


Basic Information

Item Value
gene id LOC110494981
gene name LOC106565126
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50438670 ~ 50445648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570335.2
AAATAACTCCCTCATGTCTCATCCACCAAGAGATTCTATCCAGGAAGTGGATTCGAGAACCCACCTGATCGATTTGAACCAGTggtagtaggcctacagtaaataTTCCAGGTGCGCTGGACAAAAAGTATCAGCTGGTCATTATCTGCGGGATGTTTTGGAACGAAACCTGCCGGCCTGGAATTTGATTTAGTCTACGTAGGTGCGTAACAGTAAAATGCTGCCGTTTTATAATCTCTGTAACAGGAGGGGATTTACTAGCTACAGACTAATCCGTTGAGACCGCACATCCATCGTTTCGTTTTCCTGTGATGTGTTGGTCAACATAGTTTGTGATACGTTTATGAATGTGATGCAATTTGATACATCCTTGCTGCGCAAGAGTCCCGAGCGCGGTCACGGATAGACTGGCGCCAACGGTTCAAGAACATTAACTGGCCCGATTTATATCCAACTAATCTCCATGTATCTGCCACGACGCTCAGCGAACACAGACCATCGGTTTATCATTGTACAGTTAGCCCGCACGCTCTCCATTTAGCCGGCCGCGGAGAGATGCGCGCAGATGTGGAGTACAGCCCGGTCGGCGAGGGGCTGGGGATGAGCGAGTGCTGGCTATATGTGTGGATGCGAAGGGTCGCAGTGATCGCTGCGCATGTCATAGCTGTGGGTCTCACTGTGCTGATTTCAGTACTATCCCGCCCGGGAACAAGTCTATTTTCCTGGCATCCTGTGTGTATGTCTATCGCATACATCCTGTGCCTGACCGAGGggatcctcctcttctctcccgaGGGGACTCCGTTCTGCTTCAAGGCACGGAAGGGTAAAGTCCGTCTGCACTGGTTCATCCAGGCCCTGGTCATATTGGCTGCAGCCACCGGAGTTGGCTTCATGGTTGCCAGCAAGAACGTGTCAGAGCGCCCCCACCTGGCCACCTGGCACAGCCTGCTGGGGGTGGGCACCCTGGCTGCCACCGTCCTCCAGGCCGCCTGCGGTATCTGCCTCCTCTTCCCTAAGCTGCTCAAGCTGTCGCCTCCACGGCTCAAGCTCTACCACGCCACCTGTGGCCTCGTGGTGTACCTGCTGGCGACTGTGACCGTGGTGTCGGCCATGTTTTCTGACTGGTTCCAGGCCACGGTGAAGGGGGTGGTGTGGTACGCCTTCCTGCTGCTGCCGCTGTTCCCAGCCCTGGTGATCATGAACCAAATCACTAACGCCTACCTGCCACGCAAGAAGATCACCACCTGAGACTAAGTTGTAGGTtttcacagtacagtagactatagatcAGTGTCTCCCACACCTCTCAtgagtacccccagccagtccacgtATTTGATGTATTCGACAACTAGCACAGCTGATTTAACTAACGAGGGGCTTAATTTAGTAGGTGATAATTTCAATCAGCTGTGTTAGTTCTGGAAAACGTCAAATAAGTCGATTGTCTGTGGGTACTCATGAGAGGTTGGGGAAACTgctatatatacagatatacgtATCTTGAAAGACTACCACCAGGAACTCAGTCTTACACAAGTACAAACATATACAAAGTACTAGTGACGGGAGTTagttgcatacacacacacacatctataagAAGACCTGGGTGTGACTGTTGAATCCTGATAAACATGTATGGGACCTGCCCTGAAAGGCTACTGAAAGCTCTGCTGGGACAGAGTGGATGTAACCCTGAAGTCGTCTCCATTCCGTCATCTGTTTCTCCAGAGGCTACTTTGCAAATTTTATCCAGCGAACAAAAGTCTGAGATACTGTATCTGGATGATTTAAGGCAGGGCTggccaaccctgttcctggagagctacagtcctgtaggtgttcactccaaccctaatctagcgcacctgattctaataattagctggttgataagctgaatccgtttggttacaactggggttggagtgaacctataggagggtagctctccaggaacagggttggacagCCCTGGTTTAAGGGAATACAGTACCATTGTGTATCAACCTGAGTGTGGTTGTGAGCAGAGCAGCTATGTGGGTTTTACCGTTTTGTTTTATGATTCTTTTCTCTTCAGTCAGCCTATATGTTACTGTACATTAGCCATTACGacacattttaaaaaggcttttttttttaccagtgtTTGACGTCCTGTccggagaagtgtgtgtgtgtcattgtcatTGACACTGGAAAATATTAGCTTTCTCTGAATGAAGGTATTCGCTAGAAACCCCTGGCGCACAAAGGCCTATTGGATGTACCAGCACAATGCCTAAACTTCTCCCAGTCTTATTCAGTAGGTAAAAACACTTGAAAGAAATTGTGACCAAATACCAGCATGTTGTTGGGCCATTTTTATACTTGATACAGGGCAAATAAGTCAAACAAAGGGAATAATATAGTAAGAGAccataaagattttttttaatcTATCAAGTCTTCATATGTATTACCTGCTGTGGCAGCCGCAGGAGTAAGGGAGTTGGTTCCTAATTTTGTTTTCAGAGCATACCTAGAACTCTGTATTTCCTGCTATGCTATAGGTCAAGTTTACCAGCAGCAGCTAGAGTAACTTGGTGTTGGACTAATAAAATGGCCTTTGGTGCCCATGTTGTGTAAAACAGTTCCTTGAACTACTCAAATCTCTTCTCTGCTTTACTTGCTTGTAAAACCAATCCAACGCCCTCCTGTTTTAATAAACTGTCTCCTCATTTGAACTAATGCAAGGTTGTTTACTGACTATAACGAGTGGCTGAATTGAGTTAAGGTGGTCTTTTTAGTGTGACTATATGCTCTAATAGTTGTGTCGTGTTTGAGTTCCGGGAATTGGGCGAATGGACTCGCACTGTGTACTTGCAGTTGGAAAATTTTGCCTAGTTTTCACTTCTGCGCACCTATGAACATAGATGTGTCTTCAGGTGTTGAAAAGTTTATTTCTTCAATGTTTGTTACGAGCACCTAATGAATGTAGCCTATCCTACTAAGGGCTAtgaccttcaaactctgtgctcATTAGAGTAAGAAGTGACCCCTAACCACTGATACAGGAGAAAATATTTTCTCATCCCCCTATAGCTTAGCATTGATATGGGGTGTAGggaaatctgatcctagatctgtgtttGAGGCAACTTCTACCTTGTGTGTTCATTGGATGAGCTGAGTATTTTATTAGTGGTCAGTAATCTAGGATTGTTTTAAAGAGGAACATGCAAGAGATTGTAACTCCTAACAATGTTATTTCCCATTTTATGCTTACTGGACATGACCCAGAACTGCAAAGTTGCAGTGAACCTGCTGATGTGTTGTTTAAATAAAAACCTTGAATCCCA

Function

NR:

description
cytochrome b561 domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570335.2 True 3347 mRNA 0.46 3 50438670 50445648

Neighbor

gene id symbol gene type direction distance location
atxn7l2a LOC106565127 coding upstream 1058 50427145 ~ 50437612 (+)
sypl2a LOC106565128 coding upstream 15805 50408676 ~ 50422865 (+)
LOC110494971 LOC106565129 coding upstream 35806 50400347 ~ 50402864 (+)
LOC110494986 LOC106565131 coding upstream 51728 50382072 ~ 50386942 (+)
prkar2ab LOC106565134 coding upstream 136852 50290278 ~ 50301818 (+)
ldlrad2 LOC106565124 coding downstream 43076 50483057 ~ 50500086 (+)
LOC110494989 LOC106565121 coding downstream 64771 50510419 ~ 50543166 (+)
LOC110494982 LOC106565312 coding downstream 212393 50658041 ~ 50664680 (+)
LOC110494953 LOC106565294 coding downstream 219530 50665178 ~ 50697862 (+)
kctd20 LOC106565116 coding downstream 256514 50702162 ~ 50708829 (+)
G1459583 NA non-coding upstream 13884 50424385 ~ 50424786 (+)
G1459582 NA non-coding upstream 14652 50423815 ~ 50424018 (+)
G1459575 NA non-coding upstream 34040 50404376 ~ 50404630 (+)
G1459570 NA non-coding upstream 46970 50391267 ~ 50391700 (+)
G1459618 NA non-coding downstream 7132 50452780 ~ 50453450 (+)
G1459619 NA non-coding downstream 7835 50453483 ~ 50453775 (+)
G1459620 zbtb40 non-coding downstream 8444 50454092 ~ 50454584 (+)
G1459622 NA non-coding downstream 10553 50456201 ~ 50456459 (+)
G1459602 usp48 non-coding downstream 16823 50462471 ~ 50462950 (+)
LOC110494957 qrich1 other upstream 254974 50181045 ~ 50192699 (+)
G1458807 NA other upstream 999341 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1398314 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1717426 48693321 ~ 48814670 (+)
G1459769 NA other downstream 330881 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 449292 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 634484 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3728366 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3810733 54256327 ~ 54264616 (+)

Expression


Co-expression Network