zgc:113307 (LOC106565325)


Basic Information

Item Value
gene id zgc:113307
gene name LOC106565325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52444715 ~ 52454863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568766.2
aagagggagagagggagagaaggagagagggtgagaaggagagagggaagagaaggagaagagaaagagggagagagggagaagagaaagccGGGAGAGAGGGACGAATATGGAGGATGTCTAAGGCCTGGGGTGTATGCCTCAGGAATGTATTTGGCAGTGGGTAAATACTGCAGGTagcctgaacacacacacgctcacgccCATTCAGTGCCACATGCTCATCTGTGCAGACAGTGAAccactactactgtctactgctaCTGTACATGGAACCACAGCTCAGGAATACTAACAACCACAAACCTGAACCCATAAAGAAGATGTGTGTCTGCAACTTACAACAACAAATGGCAGGAGGGCAAACTCATACCTCAATTCCTCAGCTGTATTAAGGTTGTCTTACAGTATCACCATGGCGGTACAAGTGTCGGTGCTGTCCCTAGTCCTCACTCTAGCCCTGGGCCTGATGCTGAGTGTCTGCAGGCCTGTGTGTGGCACCCCAGGGACAACCCAGGACCTGGACTATGGAGGGGTTCCTCTCTGGATCAACCGTCTTCTGGGGGAACCCTCTGTATTCAGCCTGAGGGGCCGAATGGACCGGGCATGGTACAGAGCCAACAACCCCCAGTCCTGCCCTGACCTGTGTGACTGTCCTATCCAGTGGCCCTCAGCTCTGTACTGTGACCACAGAGACCTGGGAGAGCTGCCGGACAGCATGCTTTACAATACACAATACCTGTTCCTGCAGGGCAACAACATCTCGtccctgccctcctcctctctcaccaaCTCCTCAGGACTCCGCTGGCTCATCCTGGATGATAACCGTCTGCAGACAGACGGGCTGGAGACCTCCACGCTGCAGAACCTGACCCAGCTCCAATACCTGTTCCTCAACCACAATAAGCTGACTGTCGTGCCCTCTGGCCTGCCCAGGAGCCTGCGGCAGCTCCGACTGGCACACAACCTCATCACCAGCATCTCCCCGGGAACCTTTGGGAACTTACATAATCTTACATTGCTGCTACTGCAGGGGAATAGGTTGAACGTGATTACAGAGACTGACTTCACAGGCCTGGTGTCTCTTAACCTGTTGAGCCTGAGCGGgaacctcttctcctccttcccctcccaccttcctccctccatccagcaGCTCTATCTCTCCAACAACTCTCTGTCTGGCCTGGGGGAGGAAAGTCTACAGGGCTTCACTAatctcaggtacctGCGTCTGAGCCGCTGTGGTCTAGTGAGCCCTTCCCTCCACCCCCAATCCTTCAACCTGTCTTCCCTTGTGGAGCTGGATCTCTCTTACAACAAGCTGACAACCATCCCCCTGGTTCCCCTCACACTACAGTACCTATACTTGGAGGCCAACCACATACAAGAGTTTAACGTCTCTAGTTTCTGTCGGGAGGTGGGTCCTCTGTCGTACTCCAGGATGAGGATCCTTCGTCTGGACGGGAACAAGATGTCCTATCATCTACTACCACCTGAATGGGTCTACTGCCTACGAGTCCTGCACCACATATACATCTAACCCTGACCTCGTACCTCTAACCCCCTGACCCTGCCACAACCCTGCTTTGAAGCTTACCTGGAAAGATTCTGTCAAGATTCCACAGGTCCGAACATTCagaaattaacacacacacacacacacatgcccacaaGTAGGTCATTCAAACGCACATCCTTCAAACACACATCACTCATGCCCACTCGGACGCACGTTtggacacacacaaacgcaaGCAAACGCTTACATGCTCTCAGAACAGGTCTTCAATACTcaatacatgtattttttgttgttatttttttatcctcCAGGAGTAGAGCTGAGTCTCATTTAATGTTGTTTTGCTAGTCTCACTGTAACCACTTTATACTGTAACACAGTCTGATCAGTGTATGAAGCACGTATTCATTCAAATCATCCACAAACATCACCCACCAAGGCTTGTTAATACATCACAGTACTGTAGAGTCAACTTGGAGTTGAACTGATCCAACACACACGTGTTAATGCGCACATTGTATGCGTTTTGTTACTGTAACGTTTTACAATATCGTCAATGTTTTGCTAAAGGTCAAATGATGTGCTTTATTGGATGTATGACTGTAACGCAATGTTTTTGAATATGAACAGAACAATAAAATCTTCACCATTATCAAT
>XM_021568767.2
agagggagagagggagagaaggagagagggtgagaaggagagagggaagagaaggagaagagaaagagggagagagggagaagagaaagccGGGAGAGAGGGACGAATATGGAGGATGTCTAAGGCCTGGGGTGTATGCCTCAGGAATGTATTTGGCAGTGGGTAAATACTGCAGGTagcctgaacacacacacgctcacgccCATTCAGTGCCACATGCTCATCTGTGCAGACAGTGAAccactactactgtctactgctaCTGTACATGGAACCACAGCTCAGGAATACTAACAACCACAAACCTGAACCCATAAAGAAGGTTGTCTTACAGTATCACCATGGCGGTACAAGTGTCGGTGCTGTCCCTAGTCCTCACTCTAGCCCTGGGCCTGATGCTGAGTGTCTGCAGGCCTGTGTGTGGCACCCCAGGGACAACCCAGGACCTGGACTATGGAGGGGTTCCTCTCTGGATCAACCGTCTTCTGGGGGAACCCTCTGTATTCAGCCTGAGGGGCCGAATGGACCGGGCATGGTACAGAGCCAACAACCCCCAGTCCTGCCCTGACCTGTGTGACTGTCCTATCCAGTGGCCCTCAGCTCTGTACTGTGACCACAGAGACCTGGGAGAGCTGCCGGACAGCATGCTTTACAATACACAATACCTGTTCCTGCAGGGCAACAACATCTCGtccctgccctcctcctctctcaccaaCTCCTCAGGACTCCGCTGGCTCATCCTGGATGATAACCGTCTGCAGACAGACGGGCTGGAGACCTCCACGCTGCAGAACCTGACCCAGCTCCAATACCTGTTCCTCAACCACAATAAGCTGACTGTCGTGCCCTCTGGCCTGCCCAGGAGCCTGCGGCAGCTCCGACTGGCACACAACCTCATCACCAGCATCTCCCCGGGAACCTTTGGGAACTTACATAATCTTACATTGCTGCTACTGCAGGGGAATAGGTTGAACGTGATTACAGAGACTGACTTCACAGGCCTGGTGTCTCTTAACCTGTTGAGCCTGAGCGGgaacctcttctcctccttcccctcccaccttcctccctccatccagcaGCTCTATCTCTCCAACAACTCTCTGTCTGGCCTGGGGGAGGAAAGTCTACAGGGCTTCACTAatctcaggtacctGCGTCTGAGCCGCTGTGGTCTAGTGAGCCCTTCCCTCCACCCCCAATCCTTCAACCTGTCTTCCCTTGTGGAGCTGGATCTCTCTTACAACAAGCTGACAACCATCCCCCTGGTTCCCCTCACACTACAGTACCTATACTTGGAGGCCAACCACATACAAGAGTTTAACGTCTCTAGTTTCTGTCGGGAGGTGGGTCCTCTGTCGTACTCCAGGATGAGGATCCTTCGTCTGGACGGGAACAAGATGTCCTATCATCTACTACCACCTGAATGGGTCTACTGCCTACGAGTCCTGCACCACATATACATCTAACCCTGACCTCGTACCTCTAACCCCCTGACCCTGCCACAACCCTGCTTTGAAGCTTACCTGGAAAGATTCTGTCAAGATTCCACAGGTCCGAACATTCagaaattaacacacacacacacacacatgcccacaaGTAGGTCATTCAAACGCACATCCTTCAAACACACATCACTCATGCCCACTCGGACGCACGTTtggacacacacaaacgcaaGCAAACGCTTACATGCTCTCAGAACAGGTCTTCAATACTcaatacatgtattttttgttgttatttttttatcctcCAGGAGTAGAGCTGAGTCTCATTTAATGTTGTTTTGCTAGTCTCACTGTAACCACTTTATACTGTAACACAGTCTGATCAGTGTATGAAGCACGTATTCATTCAAATCATCCACAAACATCACCCACCAAGGCTTGTTAATACATCACAGTACTGTAGAGTCAACTTGGAGTTGAACTGATCCAACACACACGTGTTAATGCGCACATTGTATGCGTTTTGTTACTGTAACGTTTTACAATATCGTCAATGTTTTGCTAAAGGTCAAATGATGTGCTTTATTGGATGTATGACTGTAACGCAATGTTTTTGAATATGAACAGAACAATAAAATCTTCACCATTATCAAT

Function

NR:

description
PREDICTED: lumican-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568766.2 False 2185 mRNA 0.50 8 52444715 52454863
XM_021568767.2 True 2111 mRNA 0.50 7 52444716 52454863

Neighbor

gene id symbol gene type direction distance location
LOC110494068 LOC106565087 coding upstream 42292 52398555 ~ 52402423 (+)
LOC100301636 LOC100301636 coding upstream 51577 52389226 ~ 52393138 (+)
LOC118936244 LOC100301636 coding upstream 63591 52377165 ~ 52381124 (+)
LOC110494066 LOC106565091 coding upstream 76365 52364095 ~ 52368350 (+)
zc3h11a zc3h11a coding upstream 80722 52342057 ~ 52363993 (+)
LOC110494072 LOC106565326 coding downstream 38908 52493771 ~ 52499544 (+)
LOC110494073 LOC106583524 coding downstream 184759 52639622 ~ 52699632 (+)
LOC110494075 LOC106565328 coding downstream 276535 52731398 ~ 52752182 (+)
LOC110494076 NA coding downstream 355295 52810158 ~ 52974852 (+)
cfap20dc cssa12h3orf67 coding downstream 1013272 53468135 ~ 53522586 (+)
G1461948 LOC106565086 non-coding upstream 21705 52422168 ~ 52423010 (+)
G1461938 NA non-coding upstream 29382 52415112 ~ 52415333 (+)
G1461440 NA non-coding upstream 39143 52405341 ~ 52405572 (+)
G1461331 NA non-coding upstream 267757 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 313905 52130593 ~ 52130810 (+)
G1462021 NA non-coding downstream 48312 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 250460 52705323 ~ 52705583 (+)
G1462172 NA non-coding downstream 267417 52722280 ~ 52722667 (+)
G1462399 NA non-coding downstream 325545 52780408 ~ 52780630 (+)
G1462526 NA non-coding downstream 502154 52957017 ~ 52957711 (+)
G1460249 LOC106565103 other upstream 1353826 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1547271 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1667643 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 2009009 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2261019 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1719151 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1801518 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2016842 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3541785 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3560714 56015577 ~ 56016613 (+)

Expression


Co-expression Network