LOC110494072 (LOC106565326)


Basic Information

Item Value
gene id LOC110494072
gene name LOC106565326
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52493771 ~ 52499544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568768.2
GCCAGGGAACCAACCCAATAGGAGGCTTGTCCactgagaaggagagaaggagggagagagggggagagagagggaggcgtaAGAGAagggtgggagagacaaaaagcagagagacagaaaactcGATTTGATAAAAGAGGGCAGGTACCATTGGCAGGACAATGAAGACAGGTGTGGGACTCTACACTGCCCTGGTGCTCTGTCTCCTGATGGGGACAGTGTTTTTACAGAGACCACGGCCTAAGAAACCTCCTAAGCCTCCAAAGCCCAGCAAGCGCCCCTCCTTCAAGCCTGCCCCGCCACCTAAGGAACCAGAACCCCAGGAGCCCACAGATTTCCCCCCTCCTGTCGTTGGCCCCCCTTCCATGTTCCCTGACTGTCCCCGGGAGTGTTTCTGCCCCCCTTCCTTCCCCAATGCCCTCTATTGCGAGAACCGGAACCTCCGTACGGTCCCTGTGATCCCGTCCAGAGTACAATACCTGTACCTGCAGAACAACTACATCTCCGAGGTAACGGCGGAACCCTTCAACAATGCCACAGAGCTGAGATGGGTCAACATGGCCAACAACCGCATCAAAAAAGTGGACAAGCAGGTGTTTGAGAAGGTACCTGGTCTGTTGTTTCTCTACATGGAGAGGAACCAGCTGAAGGAGGTTCCTGATGACCTGCCAGCTGGGTTGGAGCAGCTCAGACTCAGCCACAACCAGATCTCCAAGATCCCATCTGGAGCCTTCGGCAAGATGGAGCACCTCGCTCTGCTCGACCTGCACCacaacaagTTGAGTGACAGTGACATGGGGAAGAACACTTTTAAAGACCTGAAGAACCTGGTTCAGCTGAACTTGGCCCACAACATCCTGAAGAAGATGCCAGCTAACATCCCCAACGGCATCGCACAGCTATTCCTGGACAGGAACAACATTGACAACATCCCTAAGGACTACTTCCAAGGCTTCTCCAACCTGGCGTTTGTGAGGCTCAACTACAACCAGCTGAGTGATAAGGGAGTCCCTAAGGCTGTGTTCAACGTATCCACTCTGCTAGACCTTCACCTGGCCCACAACCAGCTCACCTCCGTCCCCCTGTTCAACCCCCAGCTGGAGCACTTGCACCTCAACCACAACAGCATCGAGAGTATTAATGGGACCCAGCTGTGTCCATTTAGTCTGTCCTCTGAGAGTCTGACTGATGAGGCTCTGATGCCCAGGCTCAGGTACCTGCGTCTGGATGGGAACCACCTGAGTCCTCCTGTCCCTCTAGATGTCATCATGTGTTTCAGACACCTCAAGTCCATCGTTGTCTAGGGGCTGCTTCAGgacgcatacacatacacaaacacacacatacatgcacacacacgcactcagaCACAGTCAGCAAACGGCAGCAAACCTACGCAGATGTACGCAAGGCCACGCACGGACAGAATACACACGCTGCCTCGGACACAAACAGACATGCTTGCCCATACGCAGTCACacgcacatacactcacacacgcacacacaactaTTTCAGATGGGTGAAATGGTGCCAAATAACCTGAGTGAAATGCTAGCTGTACGGCTTTGACAACTTCAGGAATATTTCACTCGTCTAAACAAATATTTATAAAACTAAGAACCAAGCCGTCGCATTGACTACATCTTTGAAGCATGGATGTATCTGCAGTTACTACCATGTAGTTTAAAATGCCCTTGGGGAATCTGTGTTTTTGAGGTACtttgtttataaaaaaaatataaaattatatccTTGTTTTTTGTATAAAGCAGTTgtgtacaaataaaataaatcaaatctgc

Function

NR:

description
prolargin-like

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568768.2 True 1805 mRNA 0.50 7 52493771 52499544

Neighbor

gene id symbol gene type direction distance location
zgc:113307 LOC106565325 coding upstream 38908 52444715 ~ 52454863 (+)
LOC110494068 LOC106565087 coding upstream 91348 52398555 ~ 52402423 (+)
LOC100301636 LOC100301636 coding upstream 100633 52389226 ~ 52393138 (+)
LOC118936244 LOC100301636 coding upstream 112647 52377165 ~ 52381124 (+)
LOC110494066 LOC106565091 coding upstream 125421 52364095 ~ 52368350 (+)
LOC110494073 LOC106583524 coding downstream 140078 52639622 ~ 52699632 (+)
LOC110494075 LOC106565328 coding downstream 231854 52731398 ~ 52752182 (+)
LOC110494076 NA coding downstream 310614 52810158 ~ 52974852 (+)
cfap20dc cssa12h3orf67 coding downstream 968591 53468135 ~ 53522586 (+)
LOC110494082 fam3d coding downstream 1026673 53526217 ~ 53530187 (+)
G1461948 LOC106565086 non-coding upstream 70761 52422168 ~ 52423010 (+)
G1461938 NA non-coding upstream 78438 52415112 ~ 52415333 (+)
G1461440 NA non-coding upstream 88199 52405341 ~ 52405572 (+)
G1461331 NA non-coding upstream 316813 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 362961 52130593 ~ 52130810 (+)
G1462021 NA non-coding downstream 3631 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 205779 52705323 ~ 52705583 (+)
G1462172 NA non-coding downstream 222736 52722280 ~ 52722667 (+)
G1462399 NA non-coding downstream 280864 52780408 ~ 52780630 (+)
G1462526 NA non-coding downstream 457473 52957017 ~ 52957711 (+)
G1460249 LOC106565103 other upstream 1402882 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1596327 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1716699 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 2058065 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2310075 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1674470 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1756837 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 1972161 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3497104 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3516033 56015577 ~ 56016613 (+)

Expression


Co-expression Network