XLOC_033459 (zgc:172143)


Basic Information

Item Value
gene id XLOC_033459
gene name zgc:172143
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 8367627 ~ 8371465 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065489
GTAGAGTGTCTGGGCATGTTTTCCCGATTGCCCCCTTTATTTTTAGCAGCAGTTCAGTTAGACATGTTAAACCAGACAAGCTGACCTTGACAAGAAGTTCATCGGACTACAGTTACCCATACGTAATTTCTCTAAAGATGTCCGAATCAACAACTCTCTCGATAGTTGGCGGTGAAAGAGGTTTACCATTTTCATTTACTGGTGAAGACACTGGTGCCTTTTTAAAGAAGATCTGGGTTTGGCAGGGAGAATGGCAAATCAAGGCTGTCAGGGTCTGGCTTTCAGATGATAGAAGTGAAACCTTTGGAGAATCGTCTGGATCATATAAAGAGTTTGTGTTTAAGCCTGGAGAGTGTTTCACCTCACTGTCCCTCTGGGAGAATAAAGAAGGAACACGTCTTGGAGCCATCAAATTCAAGACCAACAAGGGTAGAAAATTTTCTGCAAAAATGACCAAAGTTTCACTGCCAAAAGAAATCCCTATCGATGTCGGCTCTGGGTTTTGT
>TCONS_00065490
TGCTCCatggacaaatgtcattcaactgcacaaGTCAGGACTAAAGctaatgtgaagatgctggactttagcgttgtgtatgggtgtagtaacgagcaaacaaagaaaataaatgcataaagacagaacatttcatagACGTAATTTCTCTAAAGATGTCCGAATCAACAACTCTCTCGATAGTTGGCGGTGAAAGAGGTTTACCATTTTCATTTACTGGTGAAGACACTGGTGCCTTTTTAAAGAAGATCTGGGTTTGGCAGGGAGAATGGCAAATCAAGGCTGTCAGGGTCTGGCTTTCAGATGATAGAAGTGAAACCTTTGGAGAATCGTCTGGATCATATAAAGAGTTTGTGTTTAAGCCTGGAGAGTGTTTCACCTCACTGTCCCTCTGGGAGAATAAAGAAGGAACACGTCTTGGAGCCATCAAATTCAAGACCAACAAGGGTAGAAAATTTTCTGCAAAAATGACCAAAGTTTCACTGCCAAAAGAAATCCCTATCGATGTCGGCTCTGGGTTTTGTTTAGGCATTGTTGGAAGATCTGGCGCAGACATTGACAACATGGGGTTCATGTTTCTCAATGCAGTTCAGTCAGTAGTTCTCACCAATGTCAACTATCCCGCAGTCAATCAACTAACACCACAGGTGGAGGTAGAAGATCTCAAATCTGCCACTTATAAGAACAGAGGCTATGTCAAACAGCAGCATTCAATTGAAACCTCAAAGAAAGTGATCAAAAAATCTGTGTGGTCTATGAGTGAGACCTATTCTGCAGCATTCAGTATGGAGGTGAAGGCTGGGATTCCAAAGATCTTAGAAACTTCTACAGGATTCAGTGTCAGTGTTGGAAAAGAAGGCACTTATAGTCTGGAGCAGACGGAGGATAGAACAGAAAAACTGACCACCACTGTGGAAGTCCCACCACAGAAGAAGGTGGATGTTAACATCACCATTGGCAGAGCTTGTTTTGACCTGGCGTACACTGGCACAGTGAAGATCACGTGCAGGAATGGCAGTGTTGTCGAGTATGAAACCAAAGGTCAATATAAAGGCATCACTTACACTAACATTGAAGTGAACACTAAAGATTCTGATCTGTGATAAGTGTGGCAAGAAAGATTGTTTATAAATGGTCATTACCTAATTTGATCTAACCATGATAATCGTAGATACCTTTAACTGTTTTTGAGCTTTTTACCTATGTTttttttacaactgggatccacaacaagacttttgttaggcaGTGTacatatgtttattttatcattttagacTGTATAAAACAGTTATGAATAGGCACTTAACTCTTAATTAAGaagttgtcaaaaaaaaatgttgtctttttACGGCAATCTGTGTTTTAGGTATATTACAGAGGGAAGTATATTATAAGGGAAGCCCTAACACAGGTCCTGAATCAGTTACAGGTTTTCTGTGTCTCCTGTGTGAAAAGATTGTCATAtctcacattaaaataaattttatataaaatca
>TCONS_00065491
ATGCATTTAATCTGTGATTTCACTTTCAGACGTAATTTCTCTAAAGATGTCCGAATCAACAACTCTCTCGATAGTTGGCGGTGAAAGAGGTTTACCATTTTCATTTACTGGTGAAGACACTGGTGCCTTTTTAAAGAAGATCTGGGTTTGGCAGGGAGAATGGCAAATCAAGGCTGTCAGGGTCTGGCTTTCAGATGATAGAAGTGAAACCTTTGGAGAATCGTCTGGATCATATAAAGAGTTTGTGTTTAAGCCTGGAGAGTGTTTCACCTCACTGTCCCTCTGGGAGAATAAAGAAGGAACACGTCTTGGAGCCATCAAATTCAAGACCAACAAGGGTAGAAAATTTTCTGCAAAAATGACCAAAGTTTCACTGCCAAAAGAAATCCCTATCGATGTCGGCTCTGGGTTTTGTTTAGGCATTGTTGGAAGATCTGGCGCAGACATTGACAACATGGGGTTCATGTTTCTCAATGCAGTTCAGTCAGTAGTTCTCACCAATGTCAACTATCCCGCAGTCAATCAACTAACACCACAGGTGGAGGTAGAAGATCTCAAATCTGCCACTTATAAGAACAGAGGCTATGTCAAACAGCAGCATTCAATTGAAACCTCAAAGAAAGTGATCAAAAAATCTGTGTGGTCTATGAGTGAGACCTATTCTGCAGCATTCAGTATGGAGGTGAAGGCTGGGATTCCAAAGATCTTAGAAACTTCTACAGGATTCAGTGTCAGTGTTGGAAAAGAAGGCACTTATAGTCTGGAGCAGACGGAGGATAGAACAGAAAAACTGACCACCACTGTGGAAGTCCCACCACAGAAGAAGGTGGATGTTAACATCACCATTGGCAGAGCTTGTTTTGACCTGGCGTACACTGGCACAGTGAAGATCACGTGCAGGAATGGCAGTGTTGTCGAGTATGAAACCAAAGGTCAATATAAAGGCATCACTTACACTAACATTGAAGTGAACACTAAAGATTCTGATCTGTGATAAGTGTGGCAAGAAAGATTGTTTATAAATGGTCATTACCTAATTTGATCTAACCATGATAATCGTAGATACCTTTAACTGTTTTTGAGCTTTTTACCTATGTTttttttacaactgggatccacaacaagacttttgttaggcaGTGTacatatgtttattttatcattttagacTGTATAAAACAGTTATGAATAGGCACTTAACTCTTAATTAAGaagttgtcaaaaaaaaatgttgtctttttACGGCAATCTGTGTTTTAGGTATATTACAGAGGGAAGTATATTATAAGGGAAGCCCTAACACAGGTCCTGAATCAGTTACAGGTTTTCTGTGTCTCCTGTGTGAAAAGATTGTCATAtctcacattaaaataaattttatataaaatc
>TCONS_00068551
ATGTCCGAATCAACAACTCTCTCGATAGTTGGCGGTGAAAGAGGTTTACCATTTTCATTTACTGGTGAAGACACTGGTGCCTTTTTAAAGAAGATCTGGGTTTGGCAGGGAGAATGGCAAATCAAGGCTGTCAGGGTCTGGCTTTCAGATGATAGAAGTGAAACCTTTGGAGAATCGTCTGGATCATATAAAGAGTTTGTGTTTAAGCCTGGAGAGTGTTTCACCTCACTGTCCCTCTGGGAGAATAAAGAAGGAACACGTCTTGGAGCCATCAAATTCAAGACCAACAAGGGTAGAAAATTTTCTGCAAAAATGACCAAAGTTTCACTGCCAAAAGAAATCCCTATCGATGTCGGCTCTGGGTTTTGTTTAGGCATTGTTGGAAGATCTGGCGCAGACATTGACAACATGGGGTTCATGTTTCTCAATGCAGTTCAGTCAGTAGTTCTCACCAATGTCAACTATCCCGCAGTCAATCAACTAACACCACAGGTGGAGGTAGAAGATCTCAAATCTGCCACTTATAAGAACAGAGGCTATGTCAAACAGCAGCATTCAATTGAAACCTCAAAGAAAGTGATCAAAAAATCTGTGTGGTCTATGAGTGAGACCTATTCTGCAGCATTCAGTATGGAGGTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-22 No description available

Ensembl:

ensembl_id ENSDARG00000105433

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065489 False 506 mRNA 0.43 2 8367627 8370490
TCONS_00065490 False 1499 mRNA 0.39 2 8367929 8371465
TCONS_00065491 False 1389 mRNA 0.39 1 8370076 8371464
TCONS_00068551 True 640 lncRNA 0.43 1 8370122 8370761

Neighbor

gene id symbol gene type direction distance location
XLOC_033458 jac7 coding upstream 4900 8358547 ~ 8362727 (+)
XLOC_033457 NA coding upstream 15320 8344719 ~ 8352307 (+)
XLOC_033456 si:dkey-185m8.2 coding upstream 26239 8324506 ~ 8341388 (+)
XLOC_033455 CABZ01030282.1 coding upstream 511992 7841951 ~ 7855635 (+)
XLOC_033454 CABZ01030291.2 coding upstream 588451 7778963 ~ 7779176 (+)
XLOC_033460 CR382283.1 coding downstream 57489 8428954 ~ 8429919 (+)
XLOC_033461 jac4 coding downstream 85534 8456999 ~ 8458462 (+)
XLOC_033462 jac8 coding downstream 171852 8543317 ~ 8544855 (+)
XLOC_033463 NA coding downstream 252480 8623945 ~ 8626684 (+)
XLOC_033464 si:ch211-1o7.2 coding downstream 298933 8670398 ~ 8681182 (+)
XLOC_033453 CABZ01030292.1 non-coding upstream 595249 7772165 ~ 7772378 (+)
XLOC_033450 NA non-coding upstream 804339 7554760 ~ 7563288 (+)
XLOC_033446 NA non-coding upstream 944704 7420212 ~ 7422923 (+)
XLOC_033465 NA non-coding downstream 463844 8835309 ~ 8840615 (+)
XLOC_033467 NA non-coding downstream 689960 9061425 ~ 9063381 (+)
XLOC_033472 NA non-coding downstream 1184579 9556044 ~ 9556645 (+)

Expression


Co-expression Network