XLOC_033521 (sv2ba)


Basic Information

Item Value
gene id XLOC_033521
gene name sv2ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 15266093 ~ 15306015 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065598
CCATAATCCTCTGGTCTGCCCAACAGCCTCCTGTTAAGGTGACATGTAGGGCTTGCCTTCTGAAACTCTGCCAGGATTTTCCTTTGGATTTTAATTTATATCAGCAAGGAATTATAATTCTGGTGCAATGTGGCCTTGTGCGGAACCAACCAAAGGGAAATAGTTCATTATCATCAAAAAACACTGAGGCCTTAATTTAACTGAGGTGCATTTTATATCAACAGACCATCTTGGATTTGCATCTGTCACCAAAAGCTCTTGGGTTTTCTGAGGATTATGCTCATTTAGCATTTTTCTGGTCTACAAAATAAGAATAACACGTTTCAAGCCAAAATGGATGACCCTTACCAAAACAATATAAACCAGCAGGGAGAAGCATATCCAACATATGGGGAGGGAGGAGAATACACTTACCCCTATCAAACAGACTATCCACGCCAGGAAGAGGATGATGCTGCTAGTGATGCCACCGAAGGCCATGATGAGGATGATCAGATGTACGAGGGAGAGTACCAGGGTGTCCCACATCCAGATGAGATCAAGGAAGCGCGGAGAGCAGCCCGAAGGGAGGCCCGGATGAAGGCCAGAATGGCAGCAGAGGTGGAGGAGGAAACATTGCCAGATCAGTATGAAAGCATCATGGAGGACTGCGGTCACGGACGCTTTCAGTGGACCCTCTTCACCGTGCTGGGTTTGGCCCTGATGGCTGACGGTGTGGAGTGTTTCGTAGTGAGTTTCGCTCTGCCCAGTGCTGAGAAAGACATGTGCCTGTCCAATGCAGACAAGGGCATGCTGGgtttgATAGTGTACGTGGGGATGATGATCGGTGCTGTTGTTTGGGGCGGTCTGGCTGATAAACTGGGCAGAAAGCAGTGTTTACTCTACGCACTGGCCATCAACTGCATCTTCTCCTTCCTGTCTTGTTTTGCACAAGGCTATGGCTTCTTCATCTTCTTCAGACTCTGTTCAGGGATCGGGATTGGCGGGTCAATTCCAGTCGTCTACACATATTACGCTGAGTTTCTACAGATGGACAAGAGAGGAGAACATCTCAGCTGGCTGTGCTTGTTCTGGATGCTGGGAGGACTGTACGCTTCCTTCACTGCATGGGGAATCATCCCACATTATGGCTGGGGGTTCAGTATGGGCACCGAGTTCCAGTTCCACAGTTGGAGGGTGTTTGTTCTGGTTTGTTTCCTTCCCTCTGTGGCTGCTCTCGCAGGGCTGGTGTTCATGCCAGAGAGTCCTCGTTTCCTTCTAGAGAGTGCAAGACACGATGAGGCCTGGATGATCCTGAGGCGAGTCCACGACACCAACTGGAGAGCCAAAGGAGAGCCCGAAAGAGTCTTTCAGGTTTCTCAGATTAAAACACCTCAAACACAGGATGACGAGTTCATAGAGATTCAGAGTGAAACTGGCACTGCCTTCCAGAGATTCATGGTCAGACAGATGACCCTGGTTAAGCAGGTGATGAAGAACATGTTGTCATTGGCTGCACCTGATGTCAGACTCCATGGTTTGTTCATTGCCATTGTGTGGTTTACTATGGCCTTCAGTTATTACGGCCTAGGCACGTGGTTTCCAGACCAGATCAAGTACCTCCAGTTTGAAGAGTACGAGTCCAACGTCAAGATCTTCCACCGTGAGAGAGTCGAACGCTTTCATTTCAACTTCACTCTGCAAAATCAGCTCCACAAAGAGGGGGAGTATGTTCACGACAGGTTTATCAACATCGAAATAAGAAATGTGAAGTTCGAGGATTCGCTCTTTGAGAATTGTTATTTTGAGGACATCAAATCAACAGAGACCTTCTTCGAGAACTGCACCCTGAAAAACACAGTCTTCTACAATACCGACCTGTGGGAAGATTCCAAGTTCATTAACTGTAACCTGGAAAACACAACGTTTTTGCACCCCAAAAAAGGCTGCCATCTCAATTTCCAGGAGGAAAATGACATCCTGATCTATCTAGACAGCTTCCTGGGCAGTTTGTCTGTAATACCAGGCAACATCTTAGCAGGTCTATTAATGGATAAAATAGGACGACTTAAAATTATAGgAGGATCCATGTTAGGCTCTGCCGTCTGCACATTCTTCCTGCTCCTGTGCTTCAGTCAGTGGGCTGTGGTTCTGTTCCAGTGCCTCTTCTTTGCAGCCGGAGCTGCAGCTTGGAACGGCATCGAGGTCGTTACAGTGGAGCTCTATCCAGCCTCAAAAAGAGCCACAGCTTTCGGTGTGCTGAACGGCACATGCAAACTGGCAGCTATCATTAGCAGTTTCATCTTTGGCAAGTTCATTGGCATCACCAAGATTATACCTATAATCCTGTCCTTCTCAGCGCTGGTCTGCGGAGGGCTCCTAGCATTCAAGCTACCTGAGACTCGAGAGGTCATTCTTCAGTGAAAATAAAAGCCAAACTCTTCAAGGCCTCAGTATTTTGGTCTAGATGGACACGGGATGATTAGCCTGCTGGACactgactgcaaaaaaaaaaaggctggaaAGATAAGATATGGTGTCATGGTAGATTCAGTGTACTGCAGGGTTACTTTAATAGTATTACTTCTTTAAGTTGTAGAGCAtgtttaaaggaacacttcacttttttgaaaatagacCTAATTTACTACCTCCCAAGTTGAATTTTACTGCTTTTTAATTCTTTCAGCTGATCGCTGGGTCTGGaaggagcacatttagcttagcttagcataaatcattgaattggattagaccattagcatctcactcaaaaatttcCAAAAAGGTCTTAAtaaatttcttatttaaagctcGACTCTGAAAATAGTGTCCAGTTAGGTAGCTACAGTAGGTAACAGCATAACCATGGTAACCATGGTACTGCAGCAAGAtctcttgattattacgccagaatgagaaagtatttcctagccatatcagcctagaaaatagcaacttttcactTTCTGGTGATCTTAGTACTTGATACaactttttactttaaaaagttaaacagttaagttttacTATTTTCTAATCTATACAGCCGATATCCGGGTCTGGAGaaagcacatttagcttagcttagcataaattattgaatcagattagaccattagcatctcactcaaaaatttcCAAAAAGGTTTCAACAAATTTGTTCTTTAAAGCTCGACTCTGAAAATAGTGTCCAGTTAGGTAGCTACAGTAGGTAACAGCATAACCATGGTAACCATGGTACGGCAGCAAGGTTTCtggattattacgccagaatgagaaaatagttcctagccatatcagcctagaaaatagcaacttttcacgTTCTGTTCATCTTAGTACTTGATATAACTTTTTACTTCAATAAGTTAAAGGGTTGAGTTTTAAACCTTTTTAGTCGATCTGCGGGAATTGAGGGCACACAATTAACTTAGCTTAAagcattgaattggattagaccattagcatctcatacaaaataataaaaaaaaggttttgataATTGCTTATTTAAAGCTTGGCTCTGAAAATAGTCTCCAGTTAGGTAACTATAGTAGGTAACAGCGTAACCATGGTAatcatggtacagcagcaaagttccttgattattgcGCCAAAATAAGAAGATTCCTAGCCATATCGGCCTAGAAtaaagcaacttttcatttttttagtcCACCTTTGTACACAATCTAAATACAAAAGAGTTACGCTTTAAACAGGAAAAGTAGCGCAAGCCTTTTTGGGAATTTTTTGAgcatgatgctaatggtctaatctgattcaatgatttatgctaagctaagcttaaagtgcTCCCGGCAgacccagagatcggctgaatggtgACTTGTATAAGCTTATTCccccaaaaaagtggagtgttcttttaaattgtatattgtgtgtaaaaaaaataaatatagggAAATTCCTTTGCTACAGTGAAATCAAAAGAGCGTAGCAGTGAGTGCTGACATCGAATTCCCTTTTTATATCAAAACAAATCATAACGTTGACTGTTAAGTtctatctttaaaataaaaatgtgcgttttactttttatttgtttttctgtaaAGAAGATAAATCTTTATCTCCAATTGTATCCGTTCACTAGCTTTCAGTCATCAGCTAgatttttgttgtgttgtatttgtTTACTACTGTGGTAAGGTATGTGTTTATTTCACAttagataaatatattttatcGTGTTTTAACGTTCTTCGGATTCCCATCTTTTCAACTATTGTTTGTCATGCCTTTTCAGTAGAAGATGATCATATCACAGCAAATTGACATTGTTTGTATgaaaatagacatttttaaattgtatgtgtatgtaaCGTGTGTATAATTCTAAGGAGGAAACAATGTAGATTATTAAAATAGTTAATATAAGGTAATGGCTCCAAATAATGATTGAATTATGCCAATGATTCTGTTGATGTTTTGTCCACATCTGACCAAAGAAAAggccatttaaatgtatttttaagagGACATCTCTAAAGCAAAAAGGGGCTCTATAGCAATAGCTTTAAGTATATATTAAATGCTTCTTTTTATATATCATTTTCAAAAGTCTAAGTAAGAAAAGATtggtttatgttgttttgtttttttgatggtataaataataaaatataagttaTAATTTT
>TCONS_00065599
CGATTAGTCAGCGCTGACCTTTGTTTACATGTGCATGTGCTGGCAATTTTCTCTCATTGTAAAACGATGAGTGCTGAGAGGATGATgtttgATAGTGTACGTGGGGATGATGATCGGTGCTGTTGTTTGGGGCGGTCTGGCTGATAAACTGGGCAGAAAGCAGTGTTTACTCTACGCACTGGCCATCAACTGCATCTTCTCCTTCCTGTCTTGTTTTGCACAAGGCTATGGCTTCTTCATCTTCTTCAGACTCTGTTCAGGGATCGGGATTGGCGGGTCAATTCCAGTCGTCTACACATATTACGCTGAGTTTCTACAGATGGACAAGAGAGGAGAACATCTCAGCTGGCTGTGCTTGTTCTGGATGCTGGGAGGACTGTACGCTTCCTTCACTGCATGGGGAATCATCCCACATTATGGCTGGGGGTTCAGTATGGGCACCGAGTTCCAGTTCCACAGTTGGAGGGTGTTTGTTCTGGTTTGTTTCCTTCCCTCTGTGGCTGCTCTCGCAGGGCTGGTGTTCATGCCAGAGAGTCCTCGTTTCCTTCTAGAGAGTGCAAGACACGATGAGGCCTGGATGATCCTGAGGCGAGTCCACGACACCAACTGGAGAGCCAAAGGAGAGCCCGAAAGAGTCTTTCAGGT

Function

symbol description
sv2ba Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within chemical synaptic transmission and transmembrane transport. Predicted to be located in membrane. Predicted to be active in neuron projection and synaptic vesicle membrane. Predicted to be integral component of membrane. Orthologous to human SV2B (synaptic vesicle glycoprotein 2B).

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0055085 transmembrane transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-134 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within chemical synaptic transmission and transmembrane transport. Predicted to be located in membrane. Predicted to be active in neuron projection and synaptic vesicle membrane. Predicted to be integral component of membrane. Orthologous to human SV2B (synaptic vesicle glycoprotein 2B).

Ensembl:

ensembl_id ENSDARG00000057427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065598 False 4646 mRNA 0.41 13 15266093 15306015
TCONS_00065599 True 645 processed_transcript 0.51 5 15280549 15293242

Neighbor

gene id symbol gene type direction distance location
XLOC_033520 FP101884.1 coding upstream 133002 15132977 ~ 15133091 (+)
XLOC_033519 ntrk3b coding upstream 327513 14632157 ~ 14938580 (+)
XLOC_033518 mrpl46 coding upstream 722129 14536083 ~ 14543964 (+)
XLOC_033517 NA coding upstream 895880 14314351 ~ 14370213 (+)
XLOC_033516 rhcga coding upstream 963377 14291323 ~ 14302716 (+)
XLOC_033522 mespaa coding downstream 2027 15308042 ~ 15333427 (+)
XLOC_033523 mespba coding downstream 2204 15308219 ~ 15316731 (+)
XLOC_033524 NA coding downstream 61127 15367142 ~ 15393853 (+)
XLOC_033525 NA coding downstream 106195 15412210 ~ 15416286 (+)
XLOC_033526 igf1rb coding downstream 140214 15446229 ~ 15610129 (+)
XLOC_033515 CU467822.1 non-coding upstream 984868 14281093 ~ 14281225 (+)
XLOC_033511 NA non-coding upstream 1401009 13862309 ~ 13865084 (+)
XLOC_033509 NA non-coding upstream 1465954 13797644 ~ 13800139 (+)
XLOC_033533 NA non-coding downstream 875143 16181158 ~ 16183641 (+)
XLOC_033534 CT030144.1 non-coding downstream 897980 16203995 ~ 16204113 (+)
XLOC_033535 NA non-coding downstream 918297 16224312 ~ 16225084 (+)

Expression


Co-expression Network