XLOC_033524


Basic Information

Item Value
gene id XLOC_033524
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 15367142 ~ 15393853 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068795
TGTCATTAATGTGATCTCTAACCTGTCTCCATGCCGTTAGCCAGAGCCACAGTTCCAGGAGGGTGAATGAGAGTCAGATGAAAAACGGCTTTCATTGAGGGCTCATCGAAGCAAGGAAAAGCAGTCCTGGCAGCAGTGGGCTGCATCTGTGTGGTGGCGACAACTctgacaaaataaaagtcatctCAAAAAAACTTACCAAGGTCTCAAGGCAAACTGATGTGTAGCTTATGCCGATTCTGAGATGAACCACTGCAGCACTGGTTCCTTGTTCTCTGCCAGCCATTTAATCTTGGCTGTTGTTCTCTCGATGGCCTGCTGGAGCGCCTGAGTCCCCGAACCAAATCCGGTCTCAGCATTGTCCTTCTGGAAACGTTTCAGCTGAAACAAGACATGAATCACCTGTTGAGTAACCAGGGCACTTTAGTGCAGGCCAGAGCCGCtctcagtttgacagcttcagctgCGACCGTGGCCTTCTGGAACATCTGCCAGCCAAAGTTCCACTCGTCTGCACCACCCGCAGCGATGGCGTTGCAGTACACCGTCGACCTCAGgACCTGATGATTTGTCTCCAGTTGGCTGAGAAGTCGCTCCCAGTTTCCATGGTCATAGTTCACTCTGAAGTATCCCGACACCTTATGGTCGGTTCAGCATGATCAGCGCCCAGATACTCCACGTAGGAAGCGAAACCCTCATTCAGCCAGAGATCATTCCACCATTTCAGCGTCACGAGGTTTCCAAACCACTGGAAGACATAAATCACATGGCAAACTGTGTGAAGCCAGAAGTACTCCCAATCCCCTTCCCTGGGCCTGGACGTACCATGTGAGCCAGCTCGTGAGAAACCACAGTCGCAATCCTCTGCTTGTTGCCATTGGCAGACGTCTGCGGATCGTAGAGGAGAGCCGTTTCTCTGTAAGTGACCAGACCCCAGTTTTCCATGGCTCCCGAGTTGAAGTCAGGCAGCGCAACCTGATCTGAGAAAAGAAGAGGATGACTTTGCGTACTGCTGTTTGTGCACTGTACAAAATTTACTTAGAATTTATCCCTAATAAAGAAAAACTGGCTGCTGTGGTTACCAGAATTTCTCATAAAAATTAAGGTAGAAACCATAAAAGACATTcctaaattttaaatatttttatacaattgACA
>TCONS_00068796
GCCACAAATGTGTTAGCATAGTGGcaaattcaaaaacaagactaacgtgcTATgccaatgagggagagatggtcatcAATGGGCGGGACTTTCTACCTCTGGTGACATAAAAAACTTACCAAGGTCTCAAGGCAAACTGATGTGTAGCTTATGCCGATTCTGAGATGAACCACTGCAGCACTGGTTCCTTGTTCTCTGCCAGCCATTTAATCTTGGCTGTTGTTCTCTCGATGGCCTGCTGGAGCGCCTGAGTCCCCGAACCAAATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068795 False 1158 lncRNA 0.48 5 15367142 15393853
TCONS_00068796 True 267 lncRNA 0.48 2 15378514 15379359

Neighbor

gene id symbol gene type direction distance location
XLOC_033522 mespaa coding upstream 33715 15308042 ~ 15333427 (+)
XLOC_033523 mespba coding upstream 50411 15308219 ~ 15316731 (+)
XLOC_033521 sv2ba coding upstream 61127 15266093 ~ 15306015 (+)
XLOC_033520 FP101884.1 coding upstream 234051 15132977 ~ 15133091 (+)
XLOC_033519 ntrk3b coding upstream 428562 14632157 ~ 14938580 (+)
XLOC_033525 NA coding downstream 18357 15412210 ~ 15416286 (+)
XLOC_033526 igf1rb coding downstream 52376 15446229 ~ 15610129 (+)
XLOC_033527 lrrc28 coding downstream 224274 15618127 ~ 15653635 (+)
XLOC_033528 mef2ab coding downstream 265427 15659280 ~ 15712421 (+)
XLOC_033529 mctp2b coding downstream 342377 15736230 ~ 15788356 (+)
XLOC_033517 NA non-coding upstream 996929 14314351 ~ 14370213 (+)
XLOC_033515 CU467822.1 non-coding upstream 1085917 14281093 ~ 14281225 (+)
XLOC_033511 NA non-coding upstream 1502058 13862309 ~ 13865084 (+)
XLOC_033509 NA non-coding upstream 1567003 13797644 ~ 13800139 (+)
XLOC_033533 NA non-coding downstream 787305 16181158 ~ 16183641 (+)
XLOC_033534 CT030144.1 non-coding downstream 810142 16203995 ~ 16204113 (+)
XLOC_033535 NA non-coding downstream 830459 16224312 ~ 16225084 (+)
XLOC_033536 NA non-coding downstream 866425 16260278 ~ 16260707 (+)

Expression


Co-expression Network